Hb_002164_010

Information

Type -
Description -
Location Contig2164: 36382-37215
Sequence    

Annotation

kegg
ID rcu:RCOM_1313080
description Stellacyanin, putative
nr
ID XP_002518894.1
description Stellacyanin, putative [Ricinus communis]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9RYS5
description Stellacyanin, putative OS=Ricinus communis GN=RCOM_1313080 PE=4 SV=1
Gene Ontology
ID GO:0009055
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22378: 36763-37127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002164_010 0.0 - - Stellacyanin, putative [Ricinus communis]
2 Hb_003536_090 0.1220566853 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_000236_210 0.1612466503 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
4 Hb_000375_140 0.1654630104 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
5 Hb_001269_100 0.1751004986 - - plasma membrane ATPase 1, partial [Triticum aestivum]
6 Hb_020831_060 0.1752465245 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
7 Hb_000816_190 0.1824307178 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003893_060 0.1853807157 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000635_020 0.1914916368 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000011_260 0.1962425663 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000302_100 0.1970101024 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
12 Hb_004925_030 0.2044302296 - - EXORDIUM like 1 [Theobroma cacao]
13 Hb_002774_120 0.2079810597 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
14 Hb_002490_030 0.2093304805 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002272_200 0.2101351223 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
16 Hb_000563_140 0.2119835151 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_007163_050 0.2137932158 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
18 Hb_007575_090 0.2138162491 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
19 Hb_002003_090 0.2174665249 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
20 Hb_006538_160 0.2183879672 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002164_010 Hb_002164_010 Hb_003536_090 Hb_003536_090 Hb_002164_010--Hb_003536_090 Hb_000236_210 Hb_000236_210 Hb_002164_010--Hb_000236_210 Hb_000375_140 Hb_000375_140 Hb_002164_010--Hb_000375_140 Hb_001269_100 Hb_001269_100 Hb_002164_010--Hb_001269_100 Hb_020831_060 Hb_020831_060 Hb_002164_010--Hb_020831_060 Hb_000816_190 Hb_000816_190 Hb_002164_010--Hb_000816_190 Hb_003536_090--Hb_000236_210 Hb_017434_080 Hb_017434_080 Hb_003536_090--Hb_017434_080 Hb_003536_090--Hb_020831_060 Hb_003536_090--Hb_001269_100 Hb_000302_100 Hb_000302_100 Hb_003536_090--Hb_000302_100 Hb_003464_100 Hb_003464_100 Hb_000236_210--Hb_003464_100 Hb_000635_020 Hb_000635_020 Hb_000236_210--Hb_000635_020 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_002774_120 Hb_002774_120 Hb_000375_140--Hb_002774_120 Hb_000313_330 Hb_000313_330 Hb_000375_140--Hb_000313_330 Hb_002003_090 Hb_002003_090 Hb_000375_140--Hb_002003_090 Hb_107658_010 Hb_107658_010 Hb_000375_140--Hb_107658_010 Hb_000375_140--Hb_003536_090 Hb_001269_100--Hb_020831_060 Hb_001269_100--Hb_000236_210 Hb_001269_100--Hb_003893_060 Hb_001269_100--Hb_003464_100 Hb_140627_040 Hb_140627_040 Hb_001269_100--Hb_140627_040 Hb_000011_260 Hb_000011_260 Hb_020831_060--Hb_000011_260 Hb_004970_100 Hb_004970_100 Hb_020831_060--Hb_004970_100 Hb_020831_060--Hb_019299_020 Hb_000000_300 Hb_000000_300 Hb_020831_060--Hb_000000_300 Hb_003777_150 Hb_003777_150 Hb_020831_060--Hb_003777_150 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.04813 2.33594 4.32608 24.5306 0.538022 0.224703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.919195 0.197069 0.350698 1.73908 0.90679

CAGE analysis