Hb_002003_090

Information

Type -
Description -
Location Contig2003: 165558-170034
Sequence    

Annotation

kegg
ID rcu:RCOM_1628370
description hypothetical protein
nr
ID XP_012084506.1
description PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
swissprot
ID B0M1H3
description TPR repeat-containing protein ZIP4 OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1
trembl
ID A0A067L9V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15071 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tpr repeat-containing protein zip4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20290: 165920-166168 , PASA_asmbl_20291: 168648-168832 , PASA_asmbl_20293: 169017-169216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002003_090 0.0 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
2 Hb_002774_120 0.1661304982 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
3 Hb_179960_010 0.1679098377 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
4 Hb_012395_050 0.1750427684 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
5 Hb_002749_040 0.1755187475 - - Ribosomal protein L6 family protein [Theobroma cacao]
6 Hb_006483_060 0.1761977311 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
7 Hb_000776_040 0.1786897367 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
8 Hb_001769_070 0.179957799 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
9 Hb_000462_190 0.1802253776 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
10 Hb_074419_010 0.1836466906 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
11 Hb_029142_040 0.1838985769 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
12 Hb_061054_010 0.1847102308 - - hypothetical protein JCGZ_01675 [Jatropha curcas]
13 Hb_000203_070 0.1884338542 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
14 Hb_002518_020 0.1896387654 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
15 Hb_004558_060 0.1918010996 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
16 Hb_155444_010 0.1932474387 - - -
17 Hb_001178_090 0.1955330613 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
18 Hb_000011_260 0.1959453051 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000984_130 0.1984141108 - - tubulin [Ornithogalum longebracteatum]
20 Hb_003929_190 0.1985054303 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]

Gene co-expression network

sample Hb_002003_090 Hb_002003_090 Hb_002774_120 Hb_002774_120 Hb_002003_090--Hb_002774_120 Hb_179960_010 Hb_179960_010 Hb_002003_090--Hb_179960_010 Hb_012395_050 Hb_012395_050 Hb_002003_090--Hb_012395_050 Hb_002749_040 Hb_002749_040 Hb_002003_090--Hb_002749_040 Hb_006483_060 Hb_006483_060 Hb_002003_090--Hb_006483_060 Hb_000776_040 Hb_000776_040 Hb_002003_090--Hb_000776_040 Hb_000363_260 Hb_000363_260 Hb_002774_120--Hb_000363_260 Hb_000684_220 Hb_000684_220 Hb_002774_120--Hb_000684_220 Hb_006570_090 Hb_006570_090 Hb_002774_120--Hb_006570_090 Hb_003929_190 Hb_003929_190 Hb_002774_120--Hb_003929_190 Hb_002774_120--Hb_179960_010 Hb_003540_120 Hb_003540_120 Hb_002774_120--Hb_003540_120 Hb_179960_010--Hb_012395_050 Hb_001178_090 Hb_001178_090 Hb_179960_010--Hb_001178_090 Hb_005784_060 Hb_005784_060 Hb_179960_010--Hb_005784_060 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_158092_040 Hb_158092_040 Hb_179960_010--Hb_158092_040 Hb_155444_010 Hb_155444_010 Hb_179960_010--Hb_155444_010 Hb_012395_050--Hb_155444_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_029142_040 Hb_029142_040 Hb_012395_050--Hb_029142_040 Hb_000997_240 Hb_000997_240 Hb_012395_050--Hb_000997_240 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130 Hb_002749_040--Hb_155444_010 Hb_002749_040--Hb_012395_050 Hb_000032_430 Hb_000032_430 Hb_002749_040--Hb_000032_430 Hb_030685_010 Hb_030685_010 Hb_002749_040--Hb_030685_010 Hb_002272_200 Hb_002272_200 Hb_002749_040--Hb_002272_200 Hb_002518_020 Hb_002518_020 Hb_002749_040--Hb_002518_020 Hb_003647_040 Hb_003647_040 Hb_006483_060--Hb_003647_040 Hb_023226_030 Hb_023226_030 Hb_006483_060--Hb_023226_030 Hb_006483_060--Hb_001178_090 Hb_006483_060--Hb_000032_430 Hb_000203_070 Hb_000203_070 Hb_006483_060--Hb_000203_070 Hb_006831_080 Hb_006831_080 Hb_006483_060--Hb_006831_080 Hb_000776_040--Hb_000203_070 Hb_027380_150 Hb_027380_150 Hb_000776_040--Hb_027380_150 Hb_000791_050 Hb_000791_050 Hb_000776_040--Hb_000791_050 Hb_000776_040--Hb_003929_190 Hb_000776_040--Hb_003540_120 Hb_000834_180 Hb_000834_180 Hb_000776_040--Hb_000834_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228142 0.189791 0.410171 1.34369 0.0194691 0.0122284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0231181 0.302363 0.232045

CAGE analysis