Hb_000635_020

Information

Type -
Description -
Location Contig635: 4556-5950
Sequence    

Annotation

kegg
ID rcu:RCOM_1080830
description hypothetical protein
nr
ID XP_002514940.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LK32
description Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
trembl
ID B9RMH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51891: 3846-4124 , PASA_asmbl_51892: 4590-5657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000236_210 0.1162370918 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
3 Hb_005116_090 0.1200658986 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006816_240 0.14625975 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
5 Hb_140627_040 0.1647205622 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_007100_010 0.1676757853 - - hypothetical protein ARALYDRAFT_479822 [Arabidopsis lyrata subsp. lyrata]
7 Hb_002228_120 0.1684151402 - - potassium channel beta, putative [Ricinus communis]
8 Hb_001357_220 0.170901046 - - dopamine beta-monooxygenase, putative [Ricinus communis]
9 Hb_034713_010 0.172268013 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
10 Hb_002809_040 0.1730776289 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000922_050 0.1732828069 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
12 Hb_006088_020 0.1747538014 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_000069_560 0.1749026725 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
14 Hb_025194_070 0.1750582231 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
15 Hb_004732_070 0.1766089599 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003464_100 0.1766439896 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
17 Hb_003544_080 0.1776240863 - - Protein HVA22, putative [Ricinus communis]
18 Hb_000190_160 0.1786805808 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
19 Hb_004112_080 0.1788609392 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
20 Hb_003427_070 0.1800887882 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]

Gene co-expression network

sample Hb_000635_020 Hb_000635_020 Hb_000236_210 Hb_000236_210 Hb_000635_020--Hb_000236_210 Hb_005116_090 Hb_005116_090 Hb_000635_020--Hb_005116_090 Hb_006816_240 Hb_006816_240 Hb_000635_020--Hb_006816_240 Hb_140627_040 Hb_140627_040 Hb_000635_020--Hb_140627_040 Hb_007100_010 Hb_007100_010 Hb_000635_020--Hb_007100_010 Hb_002228_120 Hb_002228_120 Hb_000635_020--Hb_002228_120 Hb_003464_100 Hb_003464_100 Hb_000236_210--Hb_003464_100 Hb_020831_060 Hb_020831_060 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_005116_090--Hb_006816_240 Hb_034713_010 Hb_034713_010 Hb_005116_090--Hb_034713_010 Hb_005116_090--Hb_002228_120 Hb_005116_090--Hb_140627_040 Hb_015292_020 Hb_015292_020 Hb_005116_090--Hb_015292_020 Hb_006816_240--Hb_000236_210 Hb_005843_020 Hb_005843_020 Hb_006816_240--Hb_005843_020 Hb_003544_080 Hb_003544_080 Hb_006816_240--Hb_003544_080 Hb_000997_080 Hb_000997_080 Hb_006816_240--Hb_000997_080 Hb_140627_040--Hb_034713_010 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_009367_070 Hb_009367_070 Hb_140627_040--Hb_009367_070 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_000207_060 Hb_000207_060 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020 Hb_007441_140 Hb_007441_140 Hb_007100_010--Hb_007441_140 Hb_000190_160 Hb_000190_160 Hb_007100_010--Hb_000190_160 Hb_004112_080 Hb_004112_080 Hb_007100_010--Hb_004112_080 Hb_135592_010 Hb_135592_010 Hb_007100_010--Hb_135592_010 Hb_007290_040 Hb_007290_040 Hb_007100_010--Hb_007290_040 Hb_000413_120 Hb_000413_120 Hb_002228_120--Hb_000413_120 Hb_004933_010 Hb_004933_010 Hb_002228_120--Hb_004933_010 Hb_009662_040 Hb_009662_040 Hb_002228_120--Hb_009662_040 Hb_002228_120--Hb_009367_070 Hb_002228_120--Hb_034713_010 Hb_002228_120--Hb_140627_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.542828 1.10017 4.47707 17.6248 0.135606 0.297351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.712561 0.186729 0 0.278388 1.23337

CAGE analysis