Hb_007100_010

Information

Type -
Description -
Location Contig7100: 4357-5632
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_479822
description hypothetical protein
nr
ID XP_002885547.1
description hypothetical protein ARALYDRAFT_479822 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID -
description -
trembl
ID D7L2J9
description Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479822 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein ARALYDRAFT_479822

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007100_010 0.0 - - hypothetical protein ARALYDRAFT_479822 [Arabidopsis lyrata subsp. lyrata]
2 Hb_007441_140 0.1161437534 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
3 Hb_000190_160 0.152488325 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
4 Hb_004112_080 0.1672469937 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
5 Hb_000635_020 0.1676757853 - - conserved hypothetical protein [Ricinus communis]
6 Hb_135592_010 0.1680640268 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007290_040 0.1712856513 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]
8 Hb_002970_030 0.1716009748 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001431_100 0.1726152302 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
10 Hb_002228_120 0.1771547947 - - potassium channel beta, putative [Ricinus communis]
11 Hb_089040_010 0.1781291837 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
12 Hb_002307_150 0.1829384355 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
13 Hb_005116_090 0.1887340113 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004732_070 0.1901140412 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000270_050 0.1915150558 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
16 Hb_007474_010 0.1921612066 - - vacuolar invertase [Manihot esculenta]
17 Hb_009662_040 0.1934395825 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
18 Hb_001136_080 0.1935200532 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
19 Hb_001091_060 0.1944772996 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
20 Hb_001623_560 0.1952347614 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]

Gene co-expression network

sample Hb_007100_010 Hb_007100_010 Hb_007441_140 Hb_007441_140 Hb_007100_010--Hb_007441_140 Hb_000190_160 Hb_000190_160 Hb_007100_010--Hb_000190_160 Hb_004112_080 Hb_004112_080 Hb_007100_010--Hb_004112_080 Hb_000635_020 Hb_000635_020 Hb_007100_010--Hb_000635_020 Hb_135592_010 Hb_135592_010 Hb_007100_010--Hb_135592_010 Hb_007290_040 Hb_007290_040 Hb_007100_010--Hb_007290_040 Hb_007474_010 Hb_007474_010 Hb_007441_140--Hb_007474_010 Hb_000089_090 Hb_000089_090 Hb_007441_140--Hb_000089_090 Hb_007441_140--Hb_135592_010 Hb_002228_120 Hb_002228_120 Hb_007441_140--Hb_002228_120 Hb_002970_030 Hb_002970_030 Hb_007441_140--Hb_002970_030 Hb_004732_070 Hb_004732_070 Hb_000190_160--Hb_004732_070 Hb_089040_010 Hb_089040_010 Hb_000190_160--Hb_089040_010 Hb_000190_160--Hb_004112_080 Hb_039075_010 Hb_039075_010 Hb_000190_160--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000190_160--Hb_000310_040 Hb_030360_010 Hb_030360_010 Hb_000190_160--Hb_030360_010 Hb_004112_080--Hb_030360_010 Hb_009367_070 Hb_009367_070 Hb_004112_080--Hb_009367_070 Hb_004112_080--Hb_039075_010 Hb_004705_060 Hb_004705_060 Hb_004112_080--Hb_004705_060 Hb_011628_010 Hb_011628_010 Hb_004112_080--Hb_011628_010 Hb_034713_010 Hb_034713_010 Hb_004112_080--Hb_034713_010 Hb_000236_210 Hb_000236_210 Hb_000635_020--Hb_000236_210 Hb_005116_090 Hb_005116_090 Hb_000635_020--Hb_005116_090 Hb_006816_240 Hb_006816_240 Hb_000635_020--Hb_006816_240 Hb_140627_040 Hb_140627_040 Hb_000635_020--Hb_140627_040 Hb_000635_020--Hb_002228_120 Hb_000141_050 Hb_000141_050 Hb_135592_010--Hb_000141_050 Hb_013394_110 Hb_013394_110 Hb_135592_010--Hb_013394_110 Hb_012675_010 Hb_012675_010 Hb_135592_010--Hb_012675_010 Hb_087717_010 Hb_087717_010 Hb_135592_010--Hb_087717_010 Hb_005666_010 Hb_005666_010 Hb_135592_010--Hb_005666_010 Hb_188742_010 Hb_188742_010 Hb_135592_010--Hb_188742_010 Hb_004319_010 Hb_004319_010 Hb_007290_040--Hb_004319_010 Hb_005211_170 Hb_005211_170 Hb_007290_040--Hb_005211_170 Hb_002307_150 Hb_002307_150 Hb_007290_040--Hb_002307_150 Hb_000445_260 Hb_000445_260 Hb_007290_040--Hb_000445_260 Hb_001136_080 Hb_001136_080 Hb_007290_040--Hb_001136_080 Hb_000333_140 Hb_000333_140 Hb_007290_040--Hb_000333_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.1886 23.1417 53.6699 0.600949 0.647807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05956 1.63705 0 0.769374 1.45245

CAGE analysis