Hb_089040_010

Information

Type -
Description -
Location Contig89040: 1081-11914
Sequence    

Annotation

kegg
ID tcc:TCM_034945
description Glycosyl hydrolase family protein isoform 1
nr
ID XP_007018823.1
description Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
swissprot
ID Q9SGZ5
description Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2
trembl
ID A0A061FGK5
description Glycosyl hydrolase family protein isoform 1 OS=Theobroma cacao GN=TCM_034945 PE=4 SV=1
Gene Ontology
ID GO:0008422
description probable beta-d-xylosidase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61635: 3388-6875 , PASA_asmbl_61636: 8574-12093
cDNA
(Sanger)
(ID:Location)		 052_I06.ab1: 3388-4214

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089040_010 0.0 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
2 Hb_003598_020 0.1015732305 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
3 Hb_002970_030 0.1099129332 - - conserved hypothetical protein [Ricinus communis]
4 Hb_016911_010 0.1105727025 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
5 Hb_001136_080 0.1111124179 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
6 Hb_039075_010 0.1128477389 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
7 Hb_000310_040 0.1131148314 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
8 Hb_000190_160 0.1166392025 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
9 Hb_009062_020 0.1167500293 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
10 Hb_011628_010 0.1188789007 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_001775_140 0.1203778484 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
12 Hb_000861_060 0.1211864286 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
13 Hb_004732_070 0.1220530272 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001976_070 0.124425944 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
15 Hb_000333_140 0.1268246442 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_030360_010 0.1275460159 - - -
17 Hb_005731_040 0.1275682573 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
18 Hb_000227_300 0.1296375524 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001623_560 0.1301254986 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
20 Hb_005211_170 0.1301891204 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]

Gene co-expression network

sample Hb_089040_010 Hb_089040_010 Hb_003598_020 Hb_003598_020 Hb_089040_010--Hb_003598_020 Hb_002970_030 Hb_002970_030 Hb_089040_010--Hb_002970_030 Hb_016911_010 Hb_016911_010 Hb_089040_010--Hb_016911_010 Hb_001136_080 Hb_001136_080 Hb_089040_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_089040_010--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_089040_010--Hb_000310_040 Hb_105377_010 Hb_105377_010 Hb_003598_020--Hb_105377_010 Hb_005731_040 Hb_005731_040 Hb_003598_020--Hb_005731_040 Hb_004880_040 Hb_004880_040 Hb_003598_020--Hb_004880_040 Hb_097292_010 Hb_097292_010 Hb_003598_020--Hb_097292_010 Hb_001856_210 Hb_001856_210 Hb_003598_020--Hb_001856_210 Hb_001091_060 Hb_001091_060 Hb_002970_030--Hb_001091_060 Hb_012092_040 Hb_012092_040 Hb_002970_030--Hb_012092_040 Hb_002307_150 Hb_002307_150 Hb_002970_030--Hb_002307_150 Hb_001205_290 Hb_001205_290 Hb_002970_030--Hb_001205_290 Hb_004112_080 Hb_004112_080 Hb_002970_030--Hb_004112_080 Hb_009062_020 Hb_009062_020 Hb_016911_010--Hb_009062_020 Hb_016911_010--Hb_001136_080 Hb_016911_010--Hb_039075_010 Hb_051212_020 Hb_051212_020 Hb_016911_010--Hb_051212_020 Hb_001775_140 Hb_001775_140 Hb_016911_010--Hb_001775_140 Hb_015292_020 Hb_015292_020 Hb_016911_010--Hb_015292_020 Hb_000333_140 Hb_000333_140 Hb_001136_080--Hb_000333_140 Hb_001136_080--Hb_009062_020 Hb_011628_010 Hb_011628_010 Hb_001136_080--Hb_011628_010 Hb_006483_070 Hb_006483_070 Hb_001136_080--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_001136_080--Hb_001709_120 Hb_030360_010 Hb_030360_010 Hb_039075_010--Hb_030360_010 Hb_039075_010--Hb_000310_040 Hb_039075_010--Hb_004112_080 Hb_039075_010--Hb_000333_140 Hb_039075_010--Hb_011628_010 Hb_000310_040--Hb_000333_140 Hb_005211_170 Hb_005211_170 Hb_000310_040--Hb_005211_170 Hb_000310_040--Hb_030360_010 Hb_004732_070 Hb_004732_070 Hb_000310_040--Hb_004732_070 Hb_000861_060 Hb_000861_060 Hb_000310_040--Hb_000861_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03982 5.99302 12.8203 0.0118036 0.0180565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0453586 0.538303

CAGE analysis