Hb_007441_140

Information

Type -
Description -
Location Contig7441: 78059-79350
Sequence    

Annotation

kegg
ID rcu:RCOM_0658420
description cyclin-dependent protein kinase, putative
nr
ID XP_012083723.1
description PREDICTED: cyclin-U4-1 [Jatropha curcas]
swissprot
ID O80513
description Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
trembl
ID A0A067JY35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14652 PE=4 SV=1
Gene Ontology
ID GO:0019901
description cyclin-dependent protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56610: 78841-79233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_140 0.0 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
2 Hb_007100_010 0.1161437534 - - hypothetical protein ARALYDRAFT_479822 [Arabidopsis lyrata subsp. lyrata]
3 Hb_007474_010 0.1517710961 - - vacuolar invertase [Manihot esculenta]
4 Hb_000089_090 0.1577586574 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
5 Hb_135592_010 0.1604564883 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002228_120 0.1627304861 - - potassium channel beta, putative [Ricinus communis]
7 Hb_002970_030 0.1630520012 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012092_040 0.1654433047 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
9 Hb_003055_160 0.1656102627 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
10 Hb_000390_010 0.1661962968 - - PREDICTED: protein CDI [Jatropha curcas]
11 Hb_005666_010 0.16816594 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
12 Hb_001635_140 0.169047602 - - protein with unknown function [Ricinus communis]
13 Hb_004112_080 0.169280803 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
14 Hb_001141_270 0.1702722093 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
15 Hb_002307_150 0.1703007369 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
16 Hb_007290_040 0.1708815423 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]
17 Hb_001247_060 0.1737926502 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000062_280 0.1758742962 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
19 Hb_004933_010 0.1759029785 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
20 Hb_001205_290 0.176479669 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]

Gene co-expression network

sample Hb_007441_140 Hb_007441_140 Hb_007100_010 Hb_007100_010 Hb_007441_140--Hb_007100_010 Hb_007474_010 Hb_007474_010 Hb_007441_140--Hb_007474_010 Hb_000089_090 Hb_000089_090 Hb_007441_140--Hb_000089_090 Hb_135592_010 Hb_135592_010 Hb_007441_140--Hb_135592_010 Hb_002228_120 Hb_002228_120 Hb_007441_140--Hb_002228_120 Hb_002970_030 Hb_002970_030 Hb_007441_140--Hb_002970_030 Hb_000190_160 Hb_000190_160 Hb_007100_010--Hb_000190_160 Hb_004112_080 Hb_004112_080 Hb_007100_010--Hb_004112_080 Hb_000635_020 Hb_000635_020 Hb_007100_010--Hb_000635_020 Hb_007100_010--Hb_135592_010 Hb_007290_040 Hb_007290_040 Hb_007100_010--Hb_007290_040 Hb_004724_280 Hb_004724_280 Hb_007474_010--Hb_004724_280 Hb_001123_330 Hb_001123_330 Hb_007474_010--Hb_001123_330 Hb_000336_010 Hb_000336_010 Hb_007474_010--Hb_000336_010 Hb_004880_040 Hb_004880_040 Hb_007474_010--Hb_004880_040 Hb_000175_080 Hb_000175_080 Hb_007474_010--Hb_000175_080 Hb_003464_010 Hb_003464_010 Hb_007474_010--Hb_003464_010 Hb_001247_060 Hb_001247_060 Hb_000089_090--Hb_001247_060 Hb_012092_040 Hb_012092_040 Hb_000089_090--Hb_012092_040 Hb_000035_230 Hb_000035_230 Hb_000089_090--Hb_000035_230 Hb_059502_010 Hb_059502_010 Hb_000089_090--Hb_059502_010 Hb_000089_090--Hb_003464_010 Hb_000962_060 Hb_000962_060 Hb_000089_090--Hb_000962_060 Hb_000141_050 Hb_000141_050 Hb_135592_010--Hb_000141_050 Hb_013394_110 Hb_013394_110 Hb_135592_010--Hb_013394_110 Hb_012675_010 Hb_012675_010 Hb_135592_010--Hb_012675_010 Hb_087717_010 Hb_087717_010 Hb_135592_010--Hb_087717_010 Hb_005666_010 Hb_005666_010 Hb_135592_010--Hb_005666_010 Hb_188742_010 Hb_188742_010 Hb_135592_010--Hb_188742_010 Hb_000413_120 Hb_000413_120 Hb_002228_120--Hb_000413_120 Hb_004933_010 Hb_004933_010 Hb_002228_120--Hb_004933_010 Hb_009662_040 Hb_009662_040 Hb_002228_120--Hb_009662_040 Hb_009367_070 Hb_009367_070 Hb_002228_120--Hb_009367_070 Hb_034713_010 Hb_034713_010 Hb_002228_120--Hb_034713_010 Hb_140627_040 Hb_140627_040 Hb_002228_120--Hb_140627_040 Hb_001091_060 Hb_001091_060 Hb_002970_030--Hb_001091_060 Hb_002970_030--Hb_012092_040 Hb_089040_010 Hb_089040_010 Hb_002970_030--Hb_089040_010 Hb_002307_150 Hb_002307_150 Hb_002970_030--Hb_002307_150 Hb_001205_290 Hb_001205_290 Hb_002970_030--Hb_001205_290 Hb_002970_030--Hb_004112_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0384213 2.15962 4.25604 0 0.0514661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0873288 0.137292 0 0.168003 0.134816

CAGE analysis