Hb_003893_060

Information

Type -
Description -
Location Contig3893: 72707-73444
Sequence    

Annotation

kegg
ID rcu:RCOM_1505580
description hypothetical protein
nr
ID XP_002511155.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38998: 67543-71768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000236_210 0.1342942212 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
3 Hb_008406_050 0.1560439251 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
4 Hb_003464_100 0.1589602019 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
5 Hb_001269_100 0.1602546212 - - plasma membrane ATPase 1, partial [Triticum aestivum]
6 Hb_004732_070 0.1721440508 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001246_080 0.1751485015 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
8 Hb_002228_120 0.177519861 - - potassium channel beta, putative [Ricinus communis]
9 Hb_005116_090 0.1780572779 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000890_120 0.1812540982 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
11 Hb_001091_060 0.1830523368 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
12 Hb_020831_060 0.1850509499 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
13 Hb_002164_010 0.1853807157 - - Stellacyanin, putative [Ricinus communis]
14 Hb_005843_020 0.1858143599 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_000635_020 0.1891862028 - - conserved hypothetical protein [Ricinus communis]
16 Hb_034713_010 0.1896215994 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
17 Hb_000152_730 0.1914843223 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001688_090 0.1935286967 - - alcohol dehydrogenase 7 [Vitis vinifera]
19 Hb_001205_290 0.1935368855 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
20 Hb_001621_120 0.1944943821 - - Zeamatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003893_060 Hb_003893_060 Hb_000236_210 Hb_000236_210 Hb_003893_060--Hb_000236_210 Hb_008406_050 Hb_008406_050 Hb_003893_060--Hb_008406_050 Hb_003464_100 Hb_003464_100 Hb_003893_060--Hb_003464_100 Hb_001269_100 Hb_001269_100 Hb_003893_060--Hb_001269_100 Hb_004732_070 Hb_004732_070 Hb_003893_060--Hb_004732_070 Hb_001246_080 Hb_001246_080 Hb_003893_060--Hb_001246_080 Hb_000236_210--Hb_003464_100 Hb_000635_020 Hb_000635_020 Hb_000236_210--Hb_000635_020 Hb_020831_060 Hb_020831_060 Hb_000236_210--Hb_020831_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_004474_020 Hb_004474_020 Hb_008406_050--Hb_004474_020 Hb_034310_020 Hb_034310_020 Hb_008406_050--Hb_034310_020 Hb_004899_380 Hb_004899_380 Hb_008406_050--Hb_004899_380 Hb_048987_020 Hb_048987_020 Hb_008406_050--Hb_048987_020 Hb_033772_040 Hb_033772_040 Hb_008406_050--Hb_033772_040 Hb_000224_020 Hb_000224_020 Hb_008406_050--Hb_000224_020 Hb_000175_600 Hb_000175_600 Hb_003464_100--Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_003464_100--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_003464_100--Hb_069384_010 Hb_002326_090 Hb_002326_090 Hb_003464_100--Hb_002326_090 Hb_011218_010 Hb_011218_010 Hb_003464_100--Hb_011218_010 Hb_001269_100--Hb_020831_060 Hb_001269_100--Hb_000236_210 Hb_001269_100--Hb_003464_100 Hb_002164_010 Hb_002164_010 Hb_001269_100--Hb_002164_010 Hb_140627_040 Hb_140627_040 Hb_001269_100--Hb_140627_040 Hb_000310_040 Hb_000310_040 Hb_004732_070--Hb_000310_040 Hb_000190_160 Hb_000190_160 Hb_004732_070--Hb_000190_160 Hb_039075_010 Hb_039075_010 Hb_004732_070--Hb_039075_010 Hb_003777_150 Hb_003777_150 Hb_004732_070--Hb_003777_150 Hb_000270_050 Hb_000270_050 Hb_004732_070--Hb_000270_050 Hb_030360_010 Hb_030360_010 Hb_004732_070--Hb_030360_010 Hb_001246_080--Hb_003464_100 Hb_003050_210 Hb_003050_210 Hb_001246_080--Hb_003050_210 Hb_000152_730 Hb_000152_730 Hb_001246_080--Hb_000152_730 Hb_002235_330 Hb_002235_330 Hb_001246_080--Hb_002235_330 Hb_097213_010 Hb_097213_010 Hb_001246_080--Hb_097213_010 Hb_001246_080--Hb_000175_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.441029 0.341007 2.81872 10.5747 0.183665 0.0866988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0752216 0 0.212271 0.456177 0.1177

CAGE analysis