Hb_000152_730

Information

Type -
Description -
Location Contig152: 599728-604285
Sequence    

Annotation

kegg
ID rcu:RCOM_1500420
description hypothetical protein
nr
ID XP_002510953.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3UM29
description Conserved oligomeric Golgi complex subunit 7 OS=Mus musculus GN=Cog7 PE=2 SV=1
trembl
ID B9R9S8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500420 PE=4 SV=1
Gene Ontology
ID GO:0005829
description embryo yellow partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_730 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001246_080 0.1355305065 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
3 Hb_007292_060 0.1392049744 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
4 Hb_000487_130 0.140796413 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
5 Hb_002326_090 0.1458163879 - - amino acid transporter, putative [Ricinus communis]
6 Hb_090210_010 0.1472176088 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
7 Hb_011218_010 0.1476730546 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
8 Hb_003464_100 0.1489368357 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
9 Hb_001369_490 0.1499953218 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
10 Hb_000175_600 0.1518900563 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
11 Hb_001898_030 0.1526152873 - - protein kinase-coding resistance protein [Nicotiana repanda]
12 Hb_004235_040 0.154075261 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
13 Hb_164945_030 0.1571134035 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002235_330 0.1598305204 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
15 Hb_003152_010 0.1637122521 - - -
16 Hb_153258_030 0.1642821031 - - hypothetical protein RCOM_0853150 [Ricinus communis]
17 Hb_004102_180 0.165405249 - - zinc finger family protein [Populus trichocarpa]
18 Hb_000731_180 0.1660720482 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
19 Hb_003050_210 0.1663735311 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
20 Hb_000964_120 0.1665009939 - - DNA-damage-inducible protein f, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_730 Hb_000152_730 Hb_001246_080 Hb_001246_080 Hb_000152_730--Hb_001246_080 Hb_007292_060 Hb_007292_060 Hb_000152_730--Hb_007292_060 Hb_000487_130 Hb_000487_130 Hb_000152_730--Hb_000487_130 Hb_002326_090 Hb_002326_090 Hb_000152_730--Hb_002326_090 Hb_090210_010 Hb_090210_010 Hb_000152_730--Hb_090210_010 Hb_011218_010 Hb_011218_010 Hb_000152_730--Hb_011218_010 Hb_003464_100 Hb_003464_100 Hb_001246_080--Hb_003464_100 Hb_003050_210 Hb_003050_210 Hb_001246_080--Hb_003050_210 Hb_002235_330 Hb_002235_330 Hb_001246_080--Hb_002235_330 Hb_097213_010 Hb_097213_010 Hb_001246_080--Hb_097213_010 Hb_000175_600 Hb_000175_600 Hb_001246_080--Hb_000175_600 Hb_000964_120 Hb_000964_120 Hb_007292_060--Hb_000964_120 Hb_007292_060--Hb_002326_090 Hb_007292_060--Hb_090210_010 Hb_007292_060--Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_007292_060--Hb_004102_180 Hb_007292_060--Hb_011218_010 Hb_025193_010 Hb_025193_010 Hb_000487_130--Hb_025193_010 Hb_004235_040 Hb_004235_040 Hb_000487_130--Hb_004235_040 Hb_001369_490 Hb_001369_490 Hb_000487_130--Hb_001369_490 Hb_026196_020 Hb_026196_020 Hb_000487_130--Hb_026196_020 Hb_002999_020 Hb_002999_020 Hb_000487_130--Hb_002999_020 Hb_002326_090--Hb_000175_600 Hb_002326_090--Hb_000964_120 Hb_002326_090--Hb_090210_010 Hb_002326_090--Hb_004102_180 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030 Hb_153258_030 Hb_153258_030 Hb_090210_010--Hb_153258_030 Hb_000731_180 Hb_000731_180 Hb_090210_010--Hb_000731_180 Hb_000796_110 Hb_000796_110 Hb_090210_010--Hb_000796_110 Hb_090210_010--Hb_002999_020 Hb_011218_010--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_011218_010--Hb_069384_010 Hb_011218_010--Hb_000175_600 Hb_011218_010--Hb_000964_120 Hb_011218_010--Hb_002326_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0106831 0.219164 1.33506 0.0120917 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.043544 0.02768 0.0484952

CAGE analysis