Hb_025193_010

Information

Type -
Description -
Location Contig25193: 5129-10572
Sequence    

Annotation

kegg
ID rcu:RCOM_1438650
description Indole-3-acetic acid-amido synthetase GH3.17, putative
nr
ID XP_012088689.1
description PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FZ87
description Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1
trembl
ID B9RG18
description Indole-3-acetic acid-amido synthetase GH3.17, putative OS=Ricinus communis GN=RCOM_1438650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26314: 7477-7899 , PASA_asmbl_26315: 8119-8538 , PASA_asmbl_26316: 8878-9576 , PASA_asmbl_26317: 9594-10335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025193_010 0.0 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]
2 Hb_001673_090 0.1238500457 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
3 Hb_002263_050 0.1341023235 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
4 Hb_009662_040 0.1360986981 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
5 Hb_004933_010 0.1375239725 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
6 Hb_000487_130 0.1376205317 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
7 Hb_000622_230 0.1390965068 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
8 Hb_000666_040 0.1410640938 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
9 Hb_000614_300 0.1418772023 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
10 Hb_002228_120 0.1421118909 - - potassium channel beta, putative [Ricinus communis]
11 Hb_000413_120 0.1440490002 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
12 Hb_007477_010 0.144120799 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
13 Hb_001357_110 0.144479139 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_000331_630 0.1456222687 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
15 Hb_050898_040 0.1460534346 - - -
16 Hb_001568_040 0.1462694299 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000049_190 0.148254222 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_000815_010 0.1490218673 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
19 Hb_018910_010 0.1494828345 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
20 Hb_003427_030 0.1497660381 - - -

Gene co-expression network

sample Hb_025193_010 Hb_025193_010 Hb_001673_090 Hb_001673_090 Hb_025193_010--Hb_001673_090 Hb_002263_050 Hb_002263_050 Hb_025193_010--Hb_002263_050 Hb_009662_040 Hb_009662_040 Hb_025193_010--Hb_009662_040 Hb_004933_010 Hb_004933_010 Hb_025193_010--Hb_004933_010 Hb_000487_130 Hb_000487_130 Hb_025193_010--Hb_000487_130 Hb_000622_230 Hb_000622_230 Hb_025193_010--Hb_000622_230 Hb_000413_120 Hb_000413_120 Hb_001673_090--Hb_000413_120 Hb_001673_090--Hb_009662_040 Hb_001673_090--Hb_004933_010 Hb_002783_100 Hb_002783_100 Hb_001673_090--Hb_002783_100 Hb_002228_120 Hb_002228_120 Hb_001673_090--Hb_002228_120 Hb_000614_300 Hb_000614_300 Hb_002263_050--Hb_000614_300 Hb_001357_110 Hb_001357_110 Hb_002263_050--Hb_001357_110 Hb_000331_630 Hb_000331_630 Hb_002263_050--Hb_000331_630 Hb_002308_040 Hb_002308_040 Hb_002263_050--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_002263_050--Hb_002471_310 Hb_000227_290 Hb_000227_290 Hb_002263_050--Hb_000227_290 Hb_000666_040 Hb_000666_040 Hb_009662_040--Hb_000666_040 Hb_002999_020 Hb_002999_020 Hb_009662_040--Hb_002999_020 Hb_153258_030 Hb_153258_030 Hb_009662_040--Hb_153258_030 Hb_016734_110 Hb_016734_110 Hb_009662_040--Hb_016734_110 Hb_001623_560 Hb_001623_560 Hb_009662_040--Hb_001623_560 Hb_000742_040 Hb_000742_040 Hb_009662_040--Hb_000742_040 Hb_001635_140 Hb_001635_140 Hb_004933_010--Hb_001635_140 Hb_011628_010 Hb_011628_010 Hb_004933_010--Hb_011628_010 Hb_004933_010--Hb_002228_120 Hb_004933_010--Hb_000413_120 Hb_000333_140 Hb_000333_140 Hb_004933_010--Hb_000333_140 Hb_015292_020 Hb_015292_020 Hb_004933_010--Hb_015292_020 Hb_000152_730 Hb_000152_730 Hb_000487_130--Hb_000152_730 Hb_004235_040 Hb_004235_040 Hb_000487_130--Hb_004235_040 Hb_001369_490 Hb_001369_490 Hb_000487_130--Hb_001369_490 Hb_026196_020 Hb_026196_020 Hb_000487_130--Hb_026196_020 Hb_000487_130--Hb_002999_020 Hb_000622_120 Hb_000622_120 Hb_000622_230--Hb_000622_120 Hb_000106_010 Hb_000106_010 Hb_000622_230--Hb_000106_010 Hb_102772_010 Hb_102772_010 Hb_000622_230--Hb_102772_010 Hb_177208_010 Hb_177208_010 Hb_000622_230--Hb_177208_010 Hb_000622_230--Hb_002263_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.58336 2.03148 0 0.0281621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0243804 0 0.0363056 0.0381849 0.283176

CAGE analysis