Hb_000106_010

Information

Type -
Description -
Location Contig106: 9879-19121
Sequence    

Annotation

kegg
ID rcu:RCOM_0766900
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID B9T536
description Terpene synthase 10 OS=Ricinus communis GN=TPS10 PE=2 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0010334
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_010 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_004693_040 0.10328722 - - -
3 Hb_002308_040 0.103770462 - - methyladenine glycosylase family protein [Populus trichocarpa]
4 Hb_002471_310 0.1063795911 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
5 Hb_018910_010 0.108242031 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
6 Hb_005665_100 0.1083350771 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
7 Hb_024066_020 0.1113621513 - - P66 protein [Hevea brasiliensis]
8 Hb_007007_140 0.1116040984 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
9 Hb_000664_010 0.1127141423 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
10 Hb_000049_190 0.1173391905 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_001416_120 0.1178535913 - - caspase, putative [Ricinus communis]
12 Hb_011224_030 0.1187135194 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
13 Hb_029584_030 0.1188980012 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
14 Hb_004440_030 0.1193918717 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
15 Hb_177208_010 0.1215402047 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
16 Hb_004396_020 0.1227884414 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
17 Hb_150179_010 0.1233232809 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
18 Hb_004732_080 0.1241396078 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
19 Hb_001357_110 0.1252958449 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
20 Hb_001568_040 0.1260058008 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000106_010 Hb_000106_010 Hb_004693_040 Hb_004693_040 Hb_000106_010--Hb_004693_040 Hb_002308_040 Hb_002308_040 Hb_000106_010--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_000106_010--Hb_002471_310 Hb_018910_010 Hb_018910_010 Hb_000106_010--Hb_018910_010 Hb_005665_100 Hb_005665_100 Hb_000106_010--Hb_005665_100 Hb_024066_020 Hb_024066_020 Hb_000106_010--Hb_024066_020 Hb_004693_040--Hb_018910_010 Hb_004693_040--Hb_002308_040 Hb_004693_040--Hb_002471_310 Hb_004693_040--Hb_005665_100 Hb_004693_040--Hb_024066_020 Hb_000049_190 Hb_000049_190 Hb_004693_040--Hb_000049_190 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_002308_040--Hb_000664_010 Hb_002308_040--Hb_018910_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140 Hb_002471_310--Hb_005665_100 Hb_002471_310--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_002471_310--Hb_029584_030 Hb_002471_310--Hb_024066_020 Hb_018910_010--Hb_000049_190 Hb_001568_040 Hb_001568_040 Hb_018910_010--Hb_001568_040 Hb_018910_010--Hb_005665_100 Hb_018910_010--Hb_002471_310 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_000049_190 Hb_005614_060 Hb_005614_060 Hb_005665_100--Hb_005614_060 Hb_024066_020--Hb_007007_140 Hb_004396_020 Hb_004396_020 Hb_024066_020--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_024066_020--Hb_004732_080 Hb_024066_020--Hb_002308_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.178197 0.966332 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0257541 0 0 0.107569

CAGE analysis