Hb_000622_230

Information

Type -
Description -
Location Contig622: 198641-199531
Sequence    

Annotation

kegg
ID rcu:RCOM_1617310
description hypothetical protein
nr
ID XP_012083271.1
description PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RE14
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1617310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_230 0.0 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
2 Hb_000622_120 0.093315671 - - hypothetical protein [Hevea brasiliensis]
3 Hb_000106_010 0.1293276483 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_102772_010 0.1310933837 - - conserved hypothetical protein [Ricinus communis]
5 Hb_025193_010 0.1390965068 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]
6 Hb_177208_010 0.1399310258 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
7 Hb_002263_050 0.1472962375 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
8 Hb_001357_110 0.1475952634 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
9 Hb_004440_030 0.1490318231 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
10 Hb_000995_020 0.1492035977 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000614_300 0.1493894101 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
12 Hb_002308_040 0.1580835562 - - methyladenine glycosylase family protein [Populus trichocarpa]
13 Hb_005455_100 0.160236207 - - amino acid transporter, putative [Ricinus communis]
14 Hb_002471_310 0.1606784842 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
15 Hb_000331_630 0.1627806104 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
16 Hb_000227_290 0.16333384 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
17 Hb_001673_090 0.1637891236 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
18 Hb_005665_100 0.1644106223 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
19 Hb_092010_010 0.1647713386 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
20 Hb_000664_010 0.1666389832 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000622_230 Hb_000622_230 Hb_000622_120 Hb_000622_120 Hb_000622_230--Hb_000622_120 Hb_000106_010 Hb_000106_010 Hb_000622_230--Hb_000106_010 Hb_102772_010 Hb_102772_010 Hb_000622_230--Hb_102772_010 Hb_025193_010 Hb_025193_010 Hb_000622_230--Hb_025193_010 Hb_177208_010 Hb_177208_010 Hb_000622_230--Hb_177208_010 Hb_002263_050 Hb_002263_050 Hb_000622_230--Hb_002263_050 Hb_000622_120--Hb_102772_010 Hb_000622_190 Hb_000622_190 Hb_000622_120--Hb_000622_190 Hb_000115_200 Hb_000115_200 Hb_000622_120--Hb_000115_200 Hb_007574_040 Hb_007574_040 Hb_000622_120--Hb_007574_040 Hb_000622_120--Hb_177208_010 Hb_004693_040 Hb_004693_040 Hb_000106_010--Hb_004693_040 Hb_002308_040 Hb_002308_040 Hb_000106_010--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_000106_010--Hb_002471_310 Hb_018910_010 Hb_018910_010 Hb_000106_010--Hb_018910_010 Hb_005665_100 Hb_005665_100 Hb_000106_010--Hb_005665_100 Hb_024066_020 Hb_024066_020 Hb_000106_010--Hb_024066_020 Hb_102772_010--Hb_000622_190 Hb_000995_020 Hb_000995_020 Hb_102772_010--Hb_000995_020 Hb_102772_010--Hb_000115_200 Hb_001433_230 Hb_001433_230 Hb_102772_010--Hb_001433_230 Hb_001673_090 Hb_001673_090 Hb_025193_010--Hb_001673_090 Hb_025193_010--Hb_002263_050 Hb_009662_040 Hb_009662_040 Hb_025193_010--Hb_009662_040 Hb_004933_010 Hb_004933_010 Hb_025193_010--Hb_004933_010 Hb_000487_130 Hb_000487_130 Hb_025193_010--Hb_000487_130 Hb_000227_290 Hb_000227_290 Hb_177208_010--Hb_000227_290 Hb_001357_110 Hb_001357_110 Hb_177208_010--Hb_001357_110 Hb_014834_100 Hb_014834_100 Hb_177208_010--Hb_014834_100 Hb_029584_030 Hb_029584_030 Hb_177208_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_177208_010--Hb_000664_010 Hb_011224_030 Hb_011224_030 Hb_177208_010--Hb_011224_030 Hb_000614_300 Hb_000614_300 Hb_002263_050--Hb_000614_300 Hb_002263_050--Hb_001357_110 Hb_000331_630 Hb_000331_630 Hb_002263_050--Hb_000331_630 Hb_002263_050--Hb_002308_040 Hb_002263_050--Hb_002471_310 Hb_002263_050--Hb_000227_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.907014 4.86635 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0586363 0.138335 0.0841753 0.0744022 0.654407

CAGE analysis