Hb_000115_200

Information

Type -
Description -
Location Contig115: 206210-207979
Sequence    

Annotation

kegg
ID tcc:TCM_009671
description Endonuclease 2, 2 isoform 1
nr
ID XP_012082106.1
description PREDICTED: endonuclease 2 [Jatropha curcas]
swissprot
ID Q9C9G4
description Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=1 SV=1
trembl
ID A0A067JZW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18343 PE=4 SV=1
Gene Ontology
ID GO:0003676
description endonuclease 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04530: 206255-206454 , PASA_asmbl_04531: 206755-208110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_200 0.0 - - PREDICTED: endonuclease 2 [Jatropha curcas]
2 Hb_001584_270 0.0943649125 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002014_130 0.102021438 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005291_020 0.1182647475 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003580_020 0.1206397895 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003055_100 0.1223539765 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
7 Hb_006717_060 0.1236898785 - - PREDICTED: peroxidase 42 [Jatropha curcas]
8 Hb_002600_120 0.1249860904 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
9 Hb_177208_010 0.1275125564 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
10 Hb_001216_060 0.127620318 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000408_060 0.1290046269 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
12 Hb_000497_030 0.1290694031 - - -
13 Hb_102772_010 0.1315627018 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000622_120 0.1347497023 - - hypothetical protein [Hevea brasiliensis]
15 Hb_003680_240 0.1363997175 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
16 Hb_021596_050 0.1366019406 - - conserved hypothetical protein [Ricinus communis]
17 Hb_013399_060 0.1389776003 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
18 Hb_009421_060 0.1416372151 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
19 Hb_000462_120 0.1417951471 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
20 Hb_000622_190 0.141889909 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_200 Hb_000115_200 Hb_001584_270 Hb_001584_270 Hb_000115_200--Hb_001584_270 Hb_002014_130 Hb_002014_130 Hb_000115_200--Hb_002014_130 Hb_005291_020 Hb_005291_020 Hb_000115_200--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_000115_200--Hb_003580_020 Hb_003055_100 Hb_003055_100 Hb_000115_200--Hb_003055_100 Hb_006717_060 Hb_006717_060 Hb_000115_200--Hb_006717_060 Hb_001584_270--Hb_003055_100 Hb_002600_120 Hb_002600_120 Hb_001584_270--Hb_002600_120 Hb_001584_270--Hb_002014_130 Hb_006386_010 Hb_006386_010 Hb_001584_270--Hb_006386_010 Hb_001584_270--Hb_005291_020 Hb_002014_130--Hb_005291_020 Hb_002014_130--Hb_003580_020 Hb_002014_130--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_002014_130--Hb_000497_030 Hb_000408_060 Hb_000408_060 Hb_002014_130--Hb_000408_060 Hb_009421_060 Hb_009421_060 Hb_002014_130--Hb_009421_060 Hb_005291_020--Hb_003580_020 Hb_000462_120 Hb_000462_120 Hb_005291_020--Hb_000462_120 Hb_180518_010 Hb_180518_010 Hb_005291_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_005291_020--Hb_027577_010 Hb_005291_020--Hb_000497_030 Hb_003580_020--Hb_000462_120 Hb_003580_020--Hb_006717_060 Hb_003580_020--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_003580_020--Hb_000699_220 Hb_000917_030 Hb_000917_030 Hb_003055_100--Hb_000917_030 Hb_003055_100--Hb_006386_010 Hb_001195_710 Hb_001195_710 Hb_003055_100--Hb_001195_710 Hb_031579_010 Hb_031579_010 Hb_003055_100--Hb_031579_010 Hb_006717_060--Hb_000699_220 Hb_006717_060--Hb_000497_030 Hb_012114_090 Hb_012114_090 Hb_006717_060--Hb_012114_090 Hb_001349_040 Hb_001349_040 Hb_006717_060--Hb_001349_040 Hb_000336_120 Hb_000336_120 Hb_006717_060--Hb_000336_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246039 0.419735 1.70015 15.1766 0.0230673 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0564402 0.35509 0 0.590349 3.15741

CAGE analysis