Hb_003055_100

Information

Type -
Description -
Location Contig3055: 69352-72801
Sequence    

Annotation

kegg
ID rcu:RCOM_1062670
description hypothetical protein
nr
ID XP_012091541.1
description PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21386 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32252: 69146-69525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_100 0.0 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
2 Hb_001584_270 0.1015868761 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000115_200 0.1223539765 - - PREDICTED: endonuclease 2 [Jatropha curcas]
4 Hb_000917_030 0.1307671797 - - PREDICTED: uncharacterized protein LOC102629571 [Citrus sinensis]
5 Hb_006386_010 0.1384078195 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
6 Hb_001195_710 0.1424962813 - - glycosyltransferase family GT8 protein [Populus deltoides]
7 Hb_031579_010 0.1457652155 - - JHL22C18.10 [Jatropha curcas]
8 Hb_000910_030 0.1502312353 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007760_020 0.1534672303 - - PREDICTED: expansin-A1 [Populus euphratica]
10 Hb_001268_290 0.1538083736 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
11 Hb_000020_140 0.154368069 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
12 Hb_005291_020 0.1545510093 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000633_030 0.1561849954 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
14 Hb_001019_030 0.157215205 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
15 Hb_000034_060 0.1576805863 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
16 Hb_003607_090 0.1594225706 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
17 Hb_005116_040 0.1600024142 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
18 Hb_002014_130 0.1608728825 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000462_120 0.1616541645 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
20 Hb_001534_140 0.1652729065 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]

Gene co-expression network

sample Hb_003055_100 Hb_003055_100 Hb_001584_270 Hb_001584_270 Hb_003055_100--Hb_001584_270 Hb_000115_200 Hb_000115_200 Hb_003055_100--Hb_000115_200 Hb_000917_030 Hb_000917_030 Hb_003055_100--Hb_000917_030 Hb_006386_010 Hb_006386_010 Hb_003055_100--Hb_006386_010 Hb_001195_710 Hb_001195_710 Hb_003055_100--Hb_001195_710 Hb_031579_010 Hb_031579_010 Hb_003055_100--Hb_031579_010 Hb_001584_270--Hb_000115_200 Hb_002600_120 Hb_002600_120 Hb_001584_270--Hb_002600_120 Hb_002014_130 Hb_002014_130 Hb_001584_270--Hb_002014_130 Hb_001584_270--Hb_006386_010 Hb_005291_020 Hb_005291_020 Hb_001584_270--Hb_005291_020 Hb_000115_200--Hb_002014_130 Hb_000115_200--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_000115_200--Hb_003580_020 Hb_006717_060 Hb_006717_060 Hb_000115_200--Hb_006717_060 Hb_000917_030--Hb_031579_010 Hb_000034_060 Hb_000034_060 Hb_000917_030--Hb_000034_060 Hb_005116_040 Hb_005116_040 Hb_000917_030--Hb_005116_040 Hb_002031_020 Hb_002031_020 Hb_000917_030--Hb_002031_020 Hb_000633_030 Hb_000633_030 Hb_000917_030--Hb_000633_030 Hb_001268_290 Hb_001268_290 Hb_006386_010--Hb_001268_290 Hb_001019_030 Hb_001019_030 Hb_006386_010--Hb_001019_030 Hb_001410_080 Hb_001410_080 Hb_006386_010--Hb_001410_080 Hb_000910_030 Hb_000910_030 Hb_006386_010--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_006386_010--Hb_000344_030 Hb_006386_010--Hb_001195_710 Hb_001096_010 Hb_001096_010 Hb_001195_710--Hb_001096_010 Hb_000368_050 Hb_000368_050 Hb_001195_710--Hb_000368_050 Hb_001511_220 Hb_001511_220 Hb_001195_710--Hb_001511_220 Hb_002171_050 Hb_002171_050 Hb_001195_710--Hb_002171_050 Hb_182869_010 Hb_182869_010 Hb_001195_710--Hb_182869_010 Hb_000449_070 Hb_000449_070 Hb_001195_710--Hb_000449_070 Hb_031579_010--Hb_000034_060 Hb_031579_010--Hb_000633_030 Hb_010193_020 Hb_010193_020 Hb_031579_010--Hb_010193_020 Hb_000866_400 Hb_000866_400 Hb_031579_010--Hb_000866_400 Hb_011709_010 Hb_011709_010 Hb_031579_010--Hb_011709_010 Hb_000620_050 Hb_000620_050 Hb_031579_010--Hb_000620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.137835 0.893576 10.7594 0.0620699 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155058 0.243596 0 0.919724 3.56865

CAGE analysis