Hb_000917_030

Information

Type -
Description -
Location Contig917: 15499-16089
Sequence    

Annotation

kegg
ID cit:102629571
description uncharacterized LOC102629571
nr
ID XP_006476275.1
description PREDICTED: uncharacterized protein LOC102629571 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID V4TRC9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024010mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62270: 15522-15943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_030 0.0 - - PREDICTED: uncharacterized protein LOC102629571 [Citrus sinensis]
2 Hb_031579_010 0.1273737068 - - JHL22C18.10 [Jatropha curcas]
3 Hb_003055_100 0.1307671797 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
4 Hb_000034_060 0.1370454759 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
5 Hb_005116_040 0.1386215987 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
6 Hb_002031_020 0.1496431545 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
7 Hb_000633_030 0.1517179687 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
8 Hb_005291_020 0.1572724507 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000462_120 0.161590962 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
10 Hb_000581_010 0.1625080662 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
11 Hb_133926_010 0.1632085731 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
12 Hb_180518_010 0.1643520809 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
13 Hb_000487_350 0.1649304765 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001019_030 0.1658105869 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
15 Hb_006386_010 0.1663766287 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
16 Hb_025557_070 0.1686215156 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
17 Hb_188281_020 0.1696084461 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
18 Hb_000729_040 0.1697797615 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
19 Hb_027577_010 0.1703576404 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
20 Hb_000188_040 0.171183043 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_030 Hb_000917_030 Hb_031579_010 Hb_031579_010 Hb_000917_030--Hb_031579_010 Hb_003055_100 Hb_003055_100 Hb_000917_030--Hb_003055_100 Hb_000034_060 Hb_000034_060 Hb_000917_030--Hb_000034_060 Hb_005116_040 Hb_005116_040 Hb_000917_030--Hb_005116_040 Hb_002031_020 Hb_002031_020 Hb_000917_030--Hb_002031_020 Hb_000633_030 Hb_000633_030 Hb_000917_030--Hb_000633_030 Hb_031579_010--Hb_000034_060 Hb_031579_010--Hb_000633_030 Hb_010193_020 Hb_010193_020 Hb_031579_010--Hb_010193_020 Hb_000866_400 Hb_000866_400 Hb_031579_010--Hb_000866_400 Hb_011709_010 Hb_011709_010 Hb_031579_010--Hb_011709_010 Hb_000620_050 Hb_000620_050 Hb_031579_010--Hb_000620_050 Hb_001584_270 Hb_001584_270 Hb_003055_100--Hb_001584_270 Hb_000115_200 Hb_000115_200 Hb_003055_100--Hb_000115_200 Hb_006386_010 Hb_006386_010 Hb_003055_100--Hb_006386_010 Hb_001195_710 Hb_001195_710 Hb_003055_100--Hb_001195_710 Hb_003055_100--Hb_031579_010 Hb_146036_010 Hb_146036_010 Hb_000034_060--Hb_146036_010 Hb_000685_100 Hb_000685_100 Hb_000034_060--Hb_000685_100 Hb_002370_020 Hb_002370_020 Hb_000034_060--Hb_002370_020 Hb_000910_030 Hb_000910_030 Hb_000034_060--Hb_000910_030 Hb_005116_040--Hb_000685_100 Hb_001019_030 Hb_001019_030 Hb_005116_040--Hb_001019_030 Hb_025557_070 Hb_025557_070 Hb_005116_040--Hb_025557_070 Hb_007237_060 Hb_007237_060 Hb_005116_040--Hb_007237_060 Hb_005116_040--Hb_000034_060 Hb_000581_010 Hb_000581_010 Hb_002031_020--Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_002031_020--Hb_000487_350 Hb_180518_010 Hb_180518_010 Hb_002031_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_002031_020--Hb_027577_010 Hb_188281_020 Hb_188281_020 Hb_002031_020--Hb_188281_020 Hb_000188_040 Hb_000188_040 Hb_002031_020--Hb_000188_040 Hb_000413_030 Hb_000413_030 Hb_000633_030--Hb_000413_030 Hb_001269_160 Hb_001269_160 Hb_000633_030--Hb_001269_160 Hb_005056_040 Hb_005056_040 Hb_000633_030--Hb_005056_040 Hb_001456_030 Hb_001456_030 Hb_000633_030--Hb_001456_030 Hb_064047_020 Hb_064047_020 Hb_000633_030--Hb_064047_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.173685 3.93542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10328 0 0 0.299851 1.25353

CAGE analysis