Hb_025557_070

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig25557: 66556-66846
Sequence    

Annotation

kegg
ID rcu:RCOM_1472500
description transcription factor, putative
nr
ID KDP31250.1
description hypothetical protein JCGZ_11626 [Jatropha curcas]
swissprot
ID Q9CA51
description Mini zinc finger protein 1 OS=Arabidopsis thaliana GN=MIF1 PE=1 SV=1
trembl
ID A0A067KG85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11626 PE=4 SV=1
Gene Ontology
ID GO:0003677
description mini zinc finger protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_070 0.0 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
2 Hb_025557_080 0.0553998504 transcription factor TF Family: zf-HD -
3 Hb_025161_060 0.0826604548 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
4 Hb_188281_020 0.1045364767 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
5 Hb_000046_390 0.111580809 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
6 Hb_000188_040 0.1157428171 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
7 Hb_005116_040 0.1159529742 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
8 Hb_001019_030 0.1161466577 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
9 Hb_000291_240 0.1202778687 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
10 Hb_002031_020 0.1246162472 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
11 Hb_000638_230 0.1246924821 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_007237_060 0.1345123173 - - -
13 Hb_004449_100 0.1411506398 - - -
14 Hb_105885_010 0.1421720028 - - PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]
15 Hb_001454_350 0.1426414474 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
16 Hb_006252_070 0.1445184585 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
17 Hb_002073_160 0.1489019351 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
18 Hb_057343_010 0.1494232093 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
19 Hb_180518_010 0.1516414617 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
20 Hb_000193_130 0.155255544 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_025557_070 Hb_025557_070 Hb_025557_080 Hb_025557_080 Hb_025557_070--Hb_025557_080 Hb_025161_060 Hb_025161_060 Hb_025557_070--Hb_025161_060 Hb_188281_020 Hb_188281_020 Hb_025557_070--Hb_188281_020 Hb_000046_390 Hb_000046_390 Hb_025557_070--Hb_000046_390 Hb_000188_040 Hb_000188_040 Hb_025557_070--Hb_000188_040 Hb_005116_040 Hb_005116_040 Hb_025557_070--Hb_005116_040 Hb_025557_080--Hb_025161_060 Hb_000291_240 Hb_000291_240 Hb_025557_080--Hb_000291_240 Hb_025557_080--Hb_000188_040 Hb_025557_080--Hb_188281_020 Hb_002031_020 Hb_002031_020 Hb_025557_080--Hb_002031_020 Hb_025161_060--Hb_000046_390 Hb_000638_230 Hb_000638_230 Hb_025161_060--Hb_000638_230 Hb_025161_060--Hb_000291_240 Hb_002808_010 Hb_002808_010 Hb_025161_060--Hb_002808_010 Hb_188281_020--Hb_002031_020 Hb_003788_030 Hb_003788_030 Hb_188281_020--Hb_003788_030 Hb_000581_010 Hb_000581_010 Hb_188281_020--Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_188281_020--Hb_000487_350 Hb_000046_390--Hb_000638_230 Hb_001454_350 Hb_001454_350 Hb_000046_390--Hb_001454_350 Hb_000046_390--Hb_025557_080 Hb_001019_030 Hb_001019_030 Hb_000046_390--Hb_001019_030 Hb_000188_040--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000188_040--Hb_180518_010 Hb_000188_040--Hb_001454_350 Hb_005291_020 Hb_005291_020 Hb_000188_040--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_000188_040--Hb_000462_120 Hb_006252_070 Hb_006252_070 Hb_000188_040--Hb_006252_070 Hb_000685_100 Hb_000685_100 Hb_005116_040--Hb_000685_100 Hb_005116_040--Hb_001019_030 Hb_007237_060 Hb_007237_060 Hb_005116_040--Hb_007237_060 Hb_000917_030 Hb_000917_030 Hb_005116_040--Hb_000917_030 Hb_000034_060 Hb_000034_060 Hb_005116_040--Hb_000034_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.9596 0.46446 75.4086 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.404731 0 0 5.6431 17.4145

CAGE analysis