Hb_025161_060

Information

Type -
Description -
Location Contig25161: 21727-22089
Sequence    

Annotation

kegg
ID rcu:RCOM_0574900
description receptor serine/threonine kinase, putative
nr
ID KDP42828.1
description hypothetical protein JCGZ_23770 [Jatropha curcas]
swissprot
ID Q9FID5
description Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1
trembl
ID A0A067L6I7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23770 PE=3 SV=1
Gene Ontology
ID GO:0000166
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025161_060 0.0 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
2 Hb_025557_080 0.0798798178 transcription factor TF Family: zf-HD -
3 Hb_025557_070 0.0826604548 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
4 Hb_000046_390 0.0953366402 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
5 Hb_000638_230 0.1182889623 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_000291_240 0.1284382473 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
7 Hb_002808_010 0.1427263259 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
8 Hb_004449_100 0.1441567085 - - -
9 Hb_188281_020 0.1456570985 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
10 Hb_001019_030 0.1484172286 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
11 Hb_001454_350 0.1531026044 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
12 Hb_007237_060 0.1532646162 - - -
13 Hb_000188_040 0.1549581886 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
14 Hb_000477_020 0.1562192877 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
15 Hb_145975_010 0.1596615218 - - cytochrome P450, putative [Ricinus communis]
16 Hb_005116_040 0.1618653494 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
17 Hb_001675_020 0.1660999489 - - -
18 Hb_105885_010 0.1664598991 - - PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]
19 Hb_000959_200 0.1668224558 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
20 Hb_006252_070 0.1685172259 - - hypothetical protein JCGZ_17254 [Jatropha curcas]

Gene co-expression network

sample Hb_025161_060 Hb_025161_060 Hb_025557_080 Hb_025557_080 Hb_025161_060--Hb_025557_080 Hb_025557_070 Hb_025557_070 Hb_025161_060--Hb_025557_070 Hb_000046_390 Hb_000046_390 Hb_025161_060--Hb_000046_390 Hb_000638_230 Hb_000638_230 Hb_025161_060--Hb_000638_230 Hb_000291_240 Hb_000291_240 Hb_025161_060--Hb_000291_240 Hb_002808_010 Hb_002808_010 Hb_025161_060--Hb_002808_010 Hb_025557_080--Hb_025557_070 Hb_025557_080--Hb_000291_240 Hb_000188_040 Hb_000188_040 Hb_025557_080--Hb_000188_040 Hb_188281_020 Hb_188281_020 Hb_025557_080--Hb_188281_020 Hb_002031_020 Hb_002031_020 Hb_025557_080--Hb_002031_020 Hb_025557_070--Hb_188281_020 Hb_025557_070--Hb_000046_390 Hb_025557_070--Hb_000188_040 Hb_005116_040 Hb_005116_040 Hb_025557_070--Hb_005116_040 Hb_000046_390--Hb_000638_230 Hb_001454_350 Hb_001454_350 Hb_000046_390--Hb_001454_350 Hb_000046_390--Hb_025557_080 Hb_001019_030 Hb_001019_030 Hb_000046_390--Hb_001019_030 Hb_000638_230--Hb_025557_070 Hb_000638_230--Hb_000291_240 Hb_145975_010 Hb_145975_010 Hb_000638_230--Hb_145975_010 Hb_003126_120 Hb_003126_120 Hb_000638_230--Hb_003126_120 Hb_000991_060 Hb_000991_060 Hb_000291_240--Hb_000991_060 Hb_000291_240--Hb_001454_350 Hb_000243_240 Hb_000243_240 Hb_000291_240--Hb_000243_240 Hb_000291_240--Hb_145975_010 Hb_001141_430 Hb_001141_430 Hb_000291_240--Hb_001141_430 Hb_001174_020 Hb_001174_020 Hb_002808_010--Hb_001174_020 Hb_002053_170 Hb_002053_170 Hb_002808_010--Hb_002053_170 Hb_002808_010--Hb_000046_390 Hb_002808_010--Hb_005116_040 Hb_002808_010--Hb_001019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.310473 0 4.63254 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.416792 0.966877

CAGE analysis