Hb_000046_390

Information

Type -
Description -
Location Contig46: 290634-292945
Sequence    

Annotation

kegg
ID rcu:RCOM_0679870
description hypothetical protein
nr
ID XP_012069400.1
description PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
swissprot
ID B9RT03
description CASP-like protein 1D1 OS=Ricinus communis GN=RCOM_0679870 PE=2 SV=1
trembl
ID A0A067L687
description CASP-like protein OS=Jatropha curcas GN=JCGZ_02018 PE=3 SV=1
Gene Ontology
ID GO:0016020
description casp-like protein 1d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43646: 290589-292948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_390 0.0 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
2 Hb_025161_060 0.0953366402 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
3 Hb_000638_230 0.0998243464 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_001454_350 0.1113283463 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
5 Hb_025557_070 0.111580809 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
6 Hb_025557_080 0.1164539813 transcription factor TF Family: zf-HD -
7 Hb_001019_030 0.1169654593 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
8 Hb_142056_010 0.1277236691 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
9 Hb_002000_100 0.1285654068 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
10 Hb_004625_020 0.130581665 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
11 Hb_000080_100 0.1315307623 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
12 Hb_000291_240 0.1333338262 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
13 Hb_010217_020 0.1352656463 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
14 Hb_011224_150 0.1407847301 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
15 Hb_002808_010 0.1410548789 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
16 Hb_000188_040 0.1416256977 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
17 Hb_002007_330 0.1434300339 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
18 Hb_145975_010 0.1475195779 - - cytochrome P450, putative [Ricinus communis]
19 Hb_006618_100 0.1504802971 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
20 Hb_000477_020 0.1505027605 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_000046_390 Hb_000046_390 Hb_025161_060 Hb_025161_060 Hb_000046_390--Hb_025161_060 Hb_000638_230 Hb_000638_230 Hb_000046_390--Hb_000638_230 Hb_001454_350 Hb_001454_350 Hb_000046_390--Hb_001454_350 Hb_025557_070 Hb_025557_070 Hb_000046_390--Hb_025557_070 Hb_025557_080 Hb_025557_080 Hb_000046_390--Hb_025557_080 Hb_001019_030 Hb_001019_030 Hb_000046_390--Hb_001019_030 Hb_025161_060--Hb_025557_080 Hb_025161_060--Hb_025557_070 Hb_025161_060--Hb_000638_230 Hb_000291_240 Hb_000291_240 Hb_025161_060--Hb_000291_240 Hb_002808_010 Hb_002808_010 Hb_025161_060--Hb_002808_010 Hb_000638_230--Hb_025557_070 Hb_000638_230--Hb_000291_240 Hb_145975_010 Hb_145975_010 Hb_000638_230--Hb_145975_010 Hb_003126_120 Hb_003126_120 Hb_000638_230--Hb_003126_120 Hb_004158_040 Hb_004158_040 Hb_001454_350--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_001454_350--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_001454_350--Hb_001722_110 Hb_000188_040 Hb_000188_040 Hb_001454_350--Hb_000188_040 Hb_010217_020 Hb_010217_020 Hb_001454_350--Hb_010217_020 Hb_009421_060 Hb_009421_060 Hb_001454_350--Hb_009421_060 Hb_025557_070--Hb_025557_080 Hb_188281_020 Hb_188281_020 Hb_025557_070--Hb_188281_020 Hb_025557_070--Hb_000188_040 Hb_005116_040 Hb_005116_040 Hb_025557_070--Hb_005116_040 Hb_025557_080--Hb_000291_240 Hb_025557_080--Hb_000188_040 Hb_025557_080--Hb_188281_020 Hb_002031_020 Hb_002031_020 Hb_025557_080--Hb_002031_020 Hb_006386_010 Hb_006386_010 Hb_001019_030--Hb_006386_010 Hb_001268_290 Hb_001268_290 Hb_001019_030--Hb_001268_290 Hb_184074_010 Hb_184074_010 Hb_001019_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_001019_030--Hb_000334_030 Hb_004930_020 Hb_004930_020 Hb_001019_030--Hb_004930_020 Hb_001019_030--Hb_005116_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.384225 0.030994 3.28239 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.257133 0.960475

CAGE analysis