Hb_002808_010

Information

Type -
Description -
Location Contig2808: 3177-17407
Sequence    

Annotation

kegg
ID tcc:TCM_027422
description Cinnamoyl coa reductase 1 isoform 1
nr
ID ADU64758.1
description cinnamoyl-CoA reductase [Hevea brasiliensis]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID E9M776
description Cinnamoyl-CoA reductase OS=Hevea brasiliensis GN=CCR PE=2 SV=1
Gene Ontology
ID GO:0016621
description cinnamoyl- reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002808_010 0.0 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
2 Hb_001174_020 0.1014634529 - - -
3 Hb_002053_170 0.1361495695 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000046_390 0.1410548789 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
5 Hb_025161_060 0.1427263259 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
6 Hb_005116_040 0.1541315487 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
7 Hb_001019_030 0.1561282551 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
8 Hb_003212_020 0.1584107151 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
9 Hb_000705_050 0.1595821401 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
10 Hb_142056_010 0.1624930017 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
11 Hb_090390_010 0.1645801302 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
12 Hb_012077_010 0.1678593792 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
13 Hb_025557_070 0.1732861788 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
14 Hb_179138_010 0.1735282595 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
15 Hb_000080_100 0.1779197975 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
16 Hb_001144_030 0.1793153806 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
17 Hb_001675_020 0.180221806 - - -
18 Hb_003304_090 0.1809304442 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
19 Hb_004930_020 0.1810312659 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
20 Hb_003983_010 0.1831592322 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002808_010 Hb_002808_010 Hb_001174_020 Hb_001174_020 Hb_002808_010--Hb_001174_020 Hb_002053_170 Hb_002053_170 Hb_002808_010--Hb_002053_170 Hb_000046_390 Hb_000046_390 Hb_002808_010--Hb_000046_390 Hb_025161_060 Hb_025161_060 Hb_002808_010--Hb_025161_060 Hb_005116_040 Hb_005116_040 Hb_002808_010--Hb_005116_040 Hb_001019_030 Hb_001019_030 Hb_002808_010--Hb_001019_030 Hb_179138_010 Hb_179138_010 Hb_001174_020--Hb_179138_010 Hb_003212_020 Hb_003212_020 Hb_001174_020--Hb_003212_020 Hb_000705_050 Hb_000705_050 Hb_001174_020--Hb_000705_050 Hb_000011_320 Hb_000011_320 Hb_001174_020--Hb_000011_320 Hb_003304_090 Hb_003304_090 Hb_001174_020--Hb_003304_090 Hb_037684_010 Hb_037684_010 Hb_002053_170--Hb_037684_010 Hb_002213_050 Hb_002213_050 Hb_002053_170--Hb_002213_050 Hb_001131_050 Hb_001131_050 Hb_002053_170--Hb_001131_050 Hb_020817_030 Hb_020817_030 Hb_002053_170--Hb_020817_030 Hb_016564_050 Hb_016564_050 Hb_002053_170--Hb_016564_050 Hb_000046_390--Hb_025161_060 Hb_000638_230 Hb_000638_230 Hb_000046_390--Hb_000638_230 Hb_001454_350 Hb_001454_350 Hb_000046_390--Hb_001454_350 Hb_025557_070 Hb_025557_070 Hb_000046_390--Hb_025557_070 Hb_025557_080 Hb_025557_080 Hb_000046_390--Hb_025557_080 Hb_000046_390--Hb_001019_030 Hb_025161_060--Hb_025557_080 Hb_025161_060--Hb_025557_070 Hb_025161_060--Hb_000638_230 Hb_000291_240 Hb_000291_240 Hb_025161_060--Hb_000291_240 Hb_000685_100 Hb_000685_100 Hb_005116_040--Hb_000685_100 Hb_005116_040--Hb_001019_030 Hb_005116_040--Hb_025557_070 Hb_007237_060 Hb_007237_060 Hb_005116_040--Hb_007237_060 Hb_000917_030 Hb_000917_030 Hb_005116_040--Hb_000917_030 Hb_000034_060 Hb_000034_060 Hb_005116_040--Hb_000034_060 Hb_006386_010 Hb_006386_010 Hb_001019_030--Hb_006386_010 Hb_001268_290 Hb_001268_290 Hb_001019_030--Hb_001268_290 Hb_184074_010 Hb_184074_010 Hb_001019_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_001019_030--Hb_000334_030 Hb_004930_020 Hb_004930_020 Hb_001019_030--Hb_004930_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0172287 0 0.163425 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0372224 0.0642164

CAGE analysis