Hb_000705_050

Information

Type -
Description -
Location Contig705: 43385-46799
Sequence    

Annotation

kegg
ID vvi:100257097
description uncharacterized protein C167.05
nr
ID XP_002281607.1
description PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7SK62
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_050 0.0 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
2 Hb_003212_020 0.0916590767 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
3 Hb_003304_090 0.1111280661 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
4 Hb_034688_030 0.1202914533 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
5 Hb_000011_320 0.1216508526 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
6 Hb_000563_410 0.1351188976 - - hypothetical protein JCGZ_18917 [Jatropha curcas]
7 Hb_001174_020 0.136119554 - - -
8 Hb_003126_120 0.1469182849 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
9 Hb_001675_020 0.1478114208 - - -
10 Hb_002000_100 0.148107772 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
11 Hb_142056_010 0.1533625705 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
12 Hb_116194_010 0.1535202092 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_000477_020 0.1559247237 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
14 Hb_002007_330 0.1571825744 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
15 Hb_000115_290 0.1574304574 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
16 Hb_007403_100 0.1575749447 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
17 Hb_002808_010 0.1595821401 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
18 Hb_000069_630 0.1639063942 - - hypothetical protein [Hevea brasiliensis]
19 Hb_032260_130 0.1690380477 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
20 Hb_002374_520 0.1710941661 - - early nodulin 8 precursor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000705_050 Hb_000705_050 Hb_003212_020 Hb_003212_020 Hb_000705_050--Hb_003212_020 Hb_003304_090 Hb_003304_090 Hb_000705_050--Hb_003304_090 Hb_034688_030 Hb_034688_030 Hb_000705_050--Hb_034688_030 Hb_000011_320 Hb_000011_320 Hb_000705_050--Hb_000011_320 Hb_000563_410 Hb_000563_410 Hb_000705_050--Hb_000563_410 Hb_001174_020 Hb_001174_020 Hb_000705_050--Hb_001174_020 Hb_003212_020--Hb_003304_090 Hb_001675_020 Hb_001675_020 Hb_003212_020--Hb_001675_020 Hb_003212_020--Hb_000011_320 Hb_003212_020--Hb_001174_020 Hb_000477_020 Hb_000477_020 Hb_003212_020--Hb_000477_020 Hb_003304_090--Hb_000011_320 Hb_004893_010 Hb_004893_010 Hb_003304_090--Hb_004893_010 Hb_003304_090--Hb_001675_020 Hb_000659_050 Hb_000659_050 Hb_003304_090--Hb_000659_050 Hb_003126_120 Hb_003126_120 Hb_034688_030--Hb_003126_120 Hb_002627_010 Hb_002627_010 Hb_034688_030--Hb_002627_010 Hb_001775_060 Hb_001775_060 Hb_034688_030--Hb_001775_060 Hb_002592_070 Hb_002592_070 Hb_034688_030--Hb_002592_070 Hb_002000_100 Hb_002000_100 Hb_034688_030--Hb_002000_100 Hb_000453_290 Hb_000453_290 Hb_034688_030--Hb_000453_290 Hb_000561_040 Hb_000561_040 Hb_000011_320--Hb_000561_040 Hb_008304_050 Hb_008304_050 Hb_000011_320--Hb_008304_050 Hb_000389_100 Hb_000389_100 Hb_000011_320--Hb_000389_100 Hb_000011_320--Hb_004893_010 Hb_000069_630 Hb_000069_630 Hb_000563_410--Hb_000069_630 Hb_186495_010 Hb_186495_010 Hb_000563_410--Hb_186495_010 Hb_000563_410--Hb_034688_030 Hb_007161_020 Hb_007161_020 Hb_000563_410--Hb_007161_020 Hb_080068_010 Hb_080068_010 Hb_000563_410--Hb_080068_010 Hb_002808_010 Hb_002808_010 Hb_001174_020--Hb_002808_010 Hb_179138_010 Hb_179138_010 Hb_001174_020--Hb_179138_010 Hb_001174_020--Hb_000011_320 Hb_001174_020--Hb_003304_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106566 5.99838 0.78432 35.027 0.0249827 0.343941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.183581 0.0962419 0 10.4923 8.46336

CAGE analysis