Hb_003212_020

Information

Type -
Description -
Location Contig3212: 36956-38284
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G114800g
description hypothetical protein
nr
ID XP_007137289.1
description hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7AXE8
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G114800g PE=4 SV=1
Gene Ontology
ID GO:0005887
description sucrose transport protein suc4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33975: 20421-39943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003212_020 0.0 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
2 Hb_000705_050 0.0916590767 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
3 Hb_003304_090 0.0922248014 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
4 Hb_001675_020 0.1038522705 - - -
5 Hb_000011_320 0.1248293607 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
6 Hb_001174_020 0.1319025288 - - -
7 Hb_000477_020 0.1345205037 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
8 Hb_007403_100 0.1382583119 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
9 Hb_000659_050 0.1405758932 - - PREDICTED: basic blue protein-like [Jatropha curcas]
10 Hb_000561_040 0.1423547011 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
11 Hb_000327_100 0.1454935691 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
12 Hb_002000_100 0.1470646906 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
13 Hb_002007_330 0.1484057956 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
14 Hb_142056_010 0.1499337871 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
15 Hb_113945_010 0.1529969727 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_002869_090 0.1552407121 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
17 Hb_002808_010 0.1584107151 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
18 Hb_005116_040 0.1589191259 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
19 Hb_120357_010 0.1639026277 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_007237_060 0.1653762467 - - -

Gene co-expression network

sample Hb_003212_020 Hb_003212_020 Hb_000705_050 Hb_000705_050 Hb_003212_020--Hb_000705_050 Hb_003304_090 Hb_003304_090 Hb_003212_020--Hb_003304_090 Hb_001675_020 Hb_001675_020 Hb_003212_020--Hb_001675_020 Hb_000011_320 Hb_000011_320 Hb_003212_020--Hb_000011_320 Hb_001174_020 Hb_001174_020 Hb_003212_020--Hb_001174_020 Hb_000477_020 Hb_000477_020 Hb_003212_020--Hb_000477_020 Hb_000705_050--Hb_003304_090 Hb_034688_030 Hb_034688_030 Hb_000705_050--Hb_034688_030 Hb_000705_050--Hb_000011_320 Hb_000563_410 Hb_000563_410 Hb_000705_050--Hb_000563_410 Hb_000705_050--Hb_001174_020 Hb_003304_090--Hb_000011_320 Hb_004893_010 Hb_004893_010 Hb_003304_090--Hb_004893_010 Hb_003304_090--Hb_001675_020 Hb_000659_050 Hb_000659_050 Hb_003304_090--Hb_000659_050 Hb_000327_100 Hb_000327_100 Hb_001675_020--Hb_000327_100 Hb_001675_020--Hb_000659_050 Hb_001675_020--Hb_000477_020 Hb_007403_100 Hb_007403_100 Hb_001675_020--Hb_007403_100 Hb_002869_090 Hb_002869_090 Hb_001675_020--Hb_002869_090 Hb_007237_060 Hb_007237_060 Hb_001675_020--Hb_007237_060 Hb_000561_040 Hb_000561_040 Hb_000011_320--Hb_000561_040 Hb_008304_050 Hb_008304_050 Hb_000011_320--Hb_008304_050 Hb_000389_100 Hb_000389_100 Hb_000011_320--Hb_000389_100 Hb_000011_320--Hb_004893_010 Hb_002808_010 Hb_002808_010 Hb_001174_020--Hb_002808_010 Hb_179138_010 Hb_179138_010 Hb_001174_020--Hb_179138_010 Hb_001174_020--Hb_000011_320 Hb_001174_020--Hb_003304_090 Hb_000477_020--Hb_007403_100 Hb_002007_330 Hb_002007_330 Hb_000477_020--Hb_002007_330 Hb_000344_030 Hb_000344_030 Hb_000477_020--Hb_000344_030 Hb_000477_020--Hb_000327_100 Hb_002000_100 Hb_002000_100 Hb_000477_020--Hb_002000_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.64314 2.06113 68.9949 0.31658 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.71558 0 0 19.5399 14.9942

CAGE analysis