Hb_000011_320

Information

Type -
Description -
Location Contig11: 353195-354387
Sequence    

Annotation

kegg
ID rcu:RCOM_0417940
description hypothetical protein
nr
ID XP_012068799.1
description PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T3Y1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0417940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03006: 353336-354280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_320 0.0 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
2 Hb_003304_090 0.0917500725 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
3 Hb_000561_040 0.1146442173 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
4 Hb_008304_050 0.120251154 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
5 Hb_000705_050 0.1216508526 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
6 Hb_000389_100 0.1232043558 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
7 Hb_004893_010 0.1235122378 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
8 Hb_159809_080 0.1239875981 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_003212_020 0.1248293607 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
10 Hb_000106_060 0.1274855493 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
11 Hb_120357_010 0.1323667452 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_179138_010 0.1333837578 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_113945_010 0.1358349162 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_000934_180 0.1358582463 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
15 Hb_164117_010 0.1388504411 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
16 Hb_001675_020 0.1422461045 - - -
17 Hb_001174_020 0.1446580421 - - -
18 Hb_007161_020 0.146561369 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
19 Hb_170861_010 0.1479538357 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_039096_010 0.1485522949 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_000011_320 Hb_000011_320 Hb_003304_090 Hb_003304_090 Hb_000011_320--Hb_003304_090 Hb_000561_040 Hb_000561_040 Hb_000011_320--Hb_000561_040 Hb_008304_050 Hb_008304_050 Hb_000011_320--Hb_008304_050 Hb_000705_050 Hb_000705_050 Hb_000011_320--Hb_000705_050 Hb_000389_100 Hb_000389_100 Hb_000011_320--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_000011_320--Hb_004893_010 Hb_003212_020 Hb_003212_020 Hb_003304_090--Hb_003212_020 Hb_003304_090--Hb_004893_010 Hb_001675_020 Hb_001675_020 Hb_003304_090--Hb_001675_020 Hb_003304_090--Hb_000705_050 Hb_000659_050 Hb_000659_050 Hb_003304_090--Hb_000659_050 Hb_000561_040--Hb_000389_100 Hb_002869_090 Hb_002869_090 Hb_000561_040--Hb_002869_090 Hb_000561_040--Hb_000659_050 Hb_120357_010 Hb_120357_010 Hb_000561_040--Hb_120357_010 Hb_027400_020 Hb_027400_020 Hb_000561_040--Hb_027400_020 Hb_049438_020 Hb_049438_020 Hb_000561_040--Hb_049438_020 Hb_008304_050--Hb_000389_100 Hb_008304_050--Hb_004893_010 Hb_003633_170 Hb_003633_170 Hb_008304_050--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_008304_050--Hb_002566_020 Hb_031224_010 Hb_031224_010 Hb_008304_050--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_008304_050--Hb_002783_180 Hb_000705_050--Hb_003212_020 Hb_034688_030 Hb_034688_030 Hb_000705_050--Hb_034688_030 Hb_000563_410 Hb_000563_410 Hb_000705_050--Hb_000563_410 Hb_001174_020 Hb_001174_020 Hb_000705_050--Hb_001174_020 Hb_000389_100--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_000389_100--Hb_009456_010 Hb_000389_100--Hb_031224_010 Hb_000389_100--Hb_002783_180 Hb_004893_010--Hb_003633_170 Hb_032260_130 Hb_032260_130 Hb_004893_010--Hb_032260_130 Hb_004893_010--Hb_031224_010 Hb_164117_010 Hb_164117_010 Hb_004893_010--Hb_164117_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119247 3.18408 1.80671 32.5037 0 0.106042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.217104 0.127691 13.8995 8.62517

CAGE analysis