Hb_020817_030

Information

Type -
Description -
Location Contig20817: 8044-12765
Sequence    

Annotation

kegg
ID sbi:SORBI_06g013680
description SORBIDRAFT_06g013680, Sb06g013680; hypothetical protein
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID C5YEQ6
description Putative uncharacterized protein Sb06g013680 OS=Sorghum bicolor GN=Sb06g013680 PE=4 SV=1
Gene Ontology
ID GO:0005488
description PREDICTED: uncharacterized protein LOC105634770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020817_030 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_037684_010 0.1169367261 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
3 Hb_000899_060 0.1351089851 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
4 Hb_002053_170 0.1611616963 - - cytochrome P450, putative [Ricinus communis]
5 Hb_007802_010 0.161537185 - - Receptor like protein 6, putative [Theobroma cacao]
6 Hb_001907_050 0.1634317954 - - Receptor like protein 6, putative [Theobroma cacao]
7 Hb_011470_010 0.1725261186 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
8 Hb_085010_010 0.1762768639 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
9 Hb_030949_010 0.1835674908 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
10 Hb_000956_100 0.1876676803 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_001318_230 0.1923130964 - - Boron transporter, putative [Ricinus communis]
12 Hb_002477_080 0.1934749471 - - hypothetical protein RCOM_0653450 [Ricinus communis]
13 Hb_002213_050 0.1952604194 - - PREDICTED: uncharacterized protein LOC105630318 isoform X3 [Jatropha curcas]
14 Hb_000245_100 0.1973003226 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
15 Hb_002374_520 0.2004811163 - - early nodulin 8 precursor family protein [Populus trichocarpa]
16 Hb_001008_020 0.2010341995 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_126466_010 0.2023787394 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_027892_050 0.2025850115 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
19 Hb_000948_130 0.2028598537 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000090_020 0.2030153569 - - acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_020817_030 Hb_020817_030 Hb_037684_010 Hb_037684_010 Hb_020817_030--Hb_037684_010 Hb_000899_060 Hb_000899_060 Hb_020817_030--Hb_000899_060 Hb_002053_170 Hb_002053_170 Hb_020817_030--Hb_002053_170 Hb_007802_010 Hb_007802_010 Hb_020817_030--Hb_007802_010 Hb_001907_050 Hb_001907_050 Hb_020817_030--Hb_001907_050 Hb_011470_010 Hb_011470_010 Hb_020817_030--Hb_011470_010 Hb_037684_010--Hb_000899_060 Hb_002374_520 Hb_002374_520 Hb_037684_010--Hb_002374_520 Hb_000245_100 Hb_000245_100 Hb_037684_010--Hb_000245_100 Hb_037684_010--Hb_002053_170 Hb_002598_020 Hb_002598_020 Hb_037684_010--Hb_002598_020 Hb_002477_080 Hb_002477_080 Hb_000899_060--Hb_002477_080 Hb_000899_060--Hb_002374_520 Hb_000899_060--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_000899_060--Hb_000090_020 Hb_103541_010 Hb_103541_010 Hb_000899_060--Hb_103541_010 Hb_002213_050 Hb_002213_050 Hb_002053_170--Hb_002213_050 Hb_002808_010 Hb_002808_010 Hb_002053_170--Hb_002808_010 Hb_001131_050 Hb_001131_050 Hb_002053_170--Hb_001131_050 Hb_016564_050 Hb_016564_050 Hb_002053_170--Hb_016564_050 Hb_007802_010--Hb_000899_060 Hb_007802_010--Hb_037684_010 Hb_000956_100 Hb_000956_100 Hb_007802_010--Hb_000956_100 Hb_000325_010 Hb_000325_010 Hb_007802_010--Hb_000325_010 Hb_007802_010--Hb_000245_100 Hb_001318_230 Hb_001318_230 Hb_001907_050--Hb_001318_230 Hb_000041_160 Hb_000041_160 Hb_001907_050--Hb_000041_160 Hb_030949_010 Hb_030949_010 Hb_001907_050--Hb_030949_010 Hb_002335_010 Hb_002335_010 Hb_001907_050--Hb_002335_010 Hb_123078_010 Hb_123078_010 Hb_001907_050--Hb_123078_010 Hb_027892_050 Hb_027892_050 Hb_001907_050--Hb_027892_050 Hb_002272_070 Hb_002272_070 Hb_011470_010--Hb_002272_070 Hb_085010_010 Hb_085010_010 Hb_011470_010--Hb_085010_010 Hb_000072_160 Hb_000072_160 Hb_011470_010--Hb_000072_160 Hb_126466_010 Hb_126466_010 Hb_011470_010--Hb_126466_010 Hb_002329_030 Hb_002329_030 Hb_011470_010--Hb_002329_030 Hb_014361_130 Hb_014361_130 Hb_011470_010--Hb_014361_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0248577 0 0.0286292 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00969974 0.017506

CAGE analysis