Hb_016564_050

Information

Type -
Description -
Location Contig16564: 46431-48588
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15258: 46855-47002 , PASA_asmbl_15259: 47082-47307 , PASA_asmbl_15260: 47472-47589 , PASA_asmbl_15262: 48168-48574 , PASA_asmbl_15263: 49198-50536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016564_050 0.0 - - -
2 Hb_001277_380 0.0391860219 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
3 Hb_007295_020 0.0586965533 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
4 Hb_145080_010 0.1419945404 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
5 Hb_094437_030 0.1466462777 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
6 Hb_112791_030 0.1485850113 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
7 Hb_006351_120 0.1552085735 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
8 Hb_027472_190 0.1581493037 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_006355_070 0.1592673232 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
10 Hb_000856_210 0.1617378696 - - nitrate transporter, putative [Ricinus communis]
11 Hb_011432_010 0.1626844041 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
12 Hb_002876_280 0.1630701651 - - hypothetical protein RCOM_0686540 [Ricinus communis]
13 Hb_125181_010 0.1657080007 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
14 Hb_002053_170 0.165876379 - - cytochrome P450, putative [Ricinus communis]
15 Hb_001396_130 0.1701669948 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012077_010 0.1708924045 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_000207_240 0.1709612553 - - hypothetical protein RCOM_0686540 [Ricinus communis]
18 Hb_038833_010 0.1741574606 - - polyprotein [Ananas comosus]
19 Hb_011358_010 0.1780979972 - - -
20 Hb_003983_010 0.178170454 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_016564_050 Hb_016564_050 Hb_001277_380 Hb_001277_380 Hb_016564_050--Hb_001277_380 Hb_007295_020 Hb_007295_020 Hb_016564_050--Hb_007295_020 Hb_145080_010 Hb_145080_010 Hb_016564_050--Hb_145080_010 Hb_094437_030 Hb_094437_030 Hb_016564_050--Hb_094437_030 Hb_112791_030 Hb_112791_030 Hb_016564_050--Hb_112791_030 Hb_006351_120 Hb_006351_120 Hb_016564_050--Hb_006351_120 Hb_001277_380--Hb_007295_020 Hb_001277_380--Hb_145080_010 Hb_006355_070 Hb_006355_070 Hb_001277_380--Hb_006355_070 Hb_038833_010 Hb_038833_010 Hb_001277_380--Hb_038833_010 Hb_001277_380--Hb_112791_030 Hb_007295_020--Hb_145080_010 Hb_007295_020--Hb_112791_030 Hb_125181_010 Hb_125181_010 Hb_007295_020--Hb_125181_010 Hb_007295_020--Hb_094437_030 Hb_145080_010--Hb_112791_030 Hb_011358_010 Hb_011358_010 Hb_145080_010--Hb_011358_010 Hb_011432_010 Hb_011432_010 Hb_145080_010--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_145080_010--Hb_037519_010 Hb_002973_130 Hb_002973_130 Hb_145080_010--Hb_002973_130 Hb_027472_190 Hb_027472_190 Hb_094437_030--Hb_027472_190 Hb_090390_010 Hb_090390_010 Hb_094437_030--Hb_090390_010 Hb_000392_490 Hb_000392_490 Hb_094437_030--Hb_000392_490 Hb_001396_130 Hb_001396_130 Hb_094437_030--Hb_001396_130 Hb_000309_070 Hb_000309_070 Hb_094437_030--Hb_000309_070 Hb_003714_030 Hb_003714_030 Hb_094437_030--Hb_003714_030 Hb_112791_030--Hb_011358_010 Hb_112791_030--Hb_011432_010 Hb_112791_030--Hb_037519_010 Hb_112791_030--Hb_002973_130 Hb_000856_210 Hb_000856_210 Hb_006351_120--Hb_000856_210 Hb_000207_240 Hb_000207_240 Hb_006351_120--Hb_000207_240 Hb_019925_020 Hb_019925_020 Hb_006351_120--Hb_019925_020 Hb_094437_020 Hb_094437_020 Hb_006351_120--Hb_094437_020 Hb_006351_120--Hb_125181_010 Hb_006351_120--Hb_001396_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.217599 0 0.636077 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.286751 0.732572

CAGE analysis