Hb_094437_030

Information

Type -
Description -
Location Contig94437: 4386-4763
Sequence    

Annotation

kegg
ID atr:s00420p00013340
description AMTR_s00420p00013340; hypothetical protein
nr
ID ERN10468.1
description hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID A0A0A9DJU9
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094437_030 0.0 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
2 Hb_027472_190 0.108449673 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_090390_010 0.1090132504 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
4 Hb_000392_490 0.1183608781 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
5 Hb_001396_130 0.1366410841 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000309_070 0.139352959 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
7 Hb_003714_030 0.1405195493 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
8 Hb_026198_020 0.1417008536 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
9 Hb_006916_140 0.144556291 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
10 Hb_007295_020 0.1445709707 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
11 Hb_003983_010 0.1452827033 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
12 Hb_016564_050 0.1466462777 - - -
13 Hb_012077_010 0.1494019978 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_044380_010 0.1523913386 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
15 Hb_001248_140 0.1540648268 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_094437_020 0.155162358 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_002750_040 0.1583559361 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
18 Hb_186765_010 0.1587624744 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
19 Hb_002374_510 0.1603126154 - - Esterase precursor, putative [Ricinus communis]
20 Hb_001277_380 0.1609444155 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_094437_030 Hb_094437_030 Hb_027472_190 Hb_027472_190 Hb_094437_030--Hb_027472_190 Hb_090390_010 Hb_090390_010 Hb_094437_030--Hb_090390_010 Hb_000392_490 Hb_000392_490 Hb_094437_030--Hb_000392_490 Hb_001396_130 Hb_001396_130 Hb_094437_030--Hb_001396_130 Hb_000309_070 Hb_000309_070 Hb_094437_030--Hb_000309_070 Hb_003714_030 Hb_003714_030 Hb_094437_030--Hb_003714_030 Hb_027472_190--Hb_000392_490 Hb_027472_190--Hb_003714_030 Hb_016564_050 Hb_016564_050 Hb_027472_190--Hb_016564_050 Hb_007295_020 Hb_007295_020 Hb_027472_190--Hb_007295_020 Hb_027472_190--Hb_090390_010 Hb_026198_020 Hb_026198_020 Hb_090390_010--Hb_026198_020 Hb_002374_510 Hb_002374_510 Hb_090390_010--Hb_002374_510 Hb_009122_010 Hb_009122_010 Hb_090390_010--Hb_009122_010 Hb_090390_010--Hb_001396_130 Hb_003983_010 Hb_003983_010 Hb_090390_010--Hb_003983_010 Hb_000392_490--Hb_000309_070 Hb_006916_140 Hb_006916_140 Hb_000392_490--Hb_006916_140 Hb_001629_050 Hb_001629_050 Hb_000392_490--Hb_001629_050 Hb_005329_030 Hb_005329_030 Hb_000392_490--Hb_005329_030 Hb_000392_490--Hb_026198_020 Hb_000963_120 Hb_000963_120 Hb_000392_490--Hb_000963_120 Hb_186765_010 Hb_186765_010 Hb_001396_130--Hb_186765_010 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_000377_130 Hb_000377_130 Hb_001396_130--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_001396_130--Hb_006755_030 Hb_044380_010 Hb_044380_010 Hb_001396_130--Hb_044380_010 Hb_000207_240 Hb_000207_240 Hb_001396_130--Hb_000207_240 Hb_000309_070--Hb_000963_120 Hb_004374_030 Hb_004374_030 Hb_000309_070--Hb_004374_030 Hb_002119_110 Hb_002119_110 Hb_000309_070--Hb_002119_110 Hb_006992_010 Hb_006992_010 Hb_000309_070--Hb_006992_010 Hb_000309_070--Hb_002374_510 Hb_003714_030--Hb_000207_240 Hb_003714_030--Hb_044380_010 Hb_001097_140 Hb_001097_140 Hb_003714_030--Hb_001097_140 Hb_001248_140 Hb_001248_140 Hb_003714_030--Hb_001248_140 Hb_003714_030--Hb_001396_130 Hb_004530_010 Hb_004530_010 Hb_003714_030--Hb_004530_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64582 41.1552 10.8244 265.244 0.759913 1.97545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11356 0.349915 2.74854 103.671 277.534

CAGE analysis