Hb_090390_010

Information

Type -
Description -
Location Contig90390: 821-1306
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28850g
description hypothetical protein
nr
ID XP_006382147.1
description hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GCF2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28850g PE=4 SV=1
Gene Ontology
ID GO:0016787
description nbs-lrr resistance protein rgh2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090390_010 0.0 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
2 Hb_026198_020 0.1078302371 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
3 Hb_094437_030 0.1090132504 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
4 Hb_002374_510 0.1228812553 - - Esterase precursor, putative [Ricinus communis]
5 Hb_009122_010 0.1233256517 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_001396_130 0.130773315 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003983_010 0.1345865394 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
8 Hb_184074_010 0.1367506359 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
9 Hb_001976_100 0.1369923752 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
10 Hb_186765_010 0.1385643559 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
11 Hb_002750_040 0.1390981129 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
12 Hb_000392_490 0.1410826936 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
13 Hb_003371_280 0.1418403923 - - unnamed protein product [Vitis vinifera]
14 Hb_012077_010 0.1443064024 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
15 Hb_002391_240 0.1445297758 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000959_110 0.1465355085 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
17 Hb_002890_110 0.1489195331 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
18 Hb_001268_290 0.1490906556 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
19 Hb_004930_020 0.1502544992 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
20 Hb_001410_080 0.1520331902 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_090390_010 Hb_090390_010 Hb_026198_020 Hb_026198_020 Hb_090390_010--Hb_026198_020 Hb_094437_030 Hb_094437_030 Hb_090390_010--Hb_094437_030 Hb_002374_510 Hb_002374_510 Hb_090390_010--Hb_002374_510 Hb_009122_010 Hb_009122_010 Hb_090390_010--Hb_009122_010 Hb_001396_130 Hb_001396_130 Hb_090390_010--Hb_001396_130 Hb_003983_010 Hb_003983_010 Hb_090390_010--Hb_003983_010 Hb_002750_040 Hb_002750_040 Hb_026198_020--Hb_002750_040 Hb_113766_010 Hb_113766_010 Hb_026198_020--Hb_113766_010 Hb_002391_240 Hb_002391_240 Hb_026198_020--Hb_002391_240 Hb_000392_490 Hb_000392_490 Hb_026198_020--Hb_000392_490 Hb_006992_010 Hb_006992_010 Hb_026198_020--Hb_006992_010 Hb_027472_190 Hb_027472_190 Hb_094437_030--Hb_027472_190 Hb_094437_030--Hb_000392_490 Hb_094437_030--Hb_001396_130 Hb_000309_070 Hb_000309_070 Hb_094437_030--Hb_000309_070 Hb_003714_030 Hb_003714_030 Hb_094437_030--Hb_003714_030 Hb_002374_510--Hb_009122_010 Hb_003371_280 Hb_003371_280 Hb_002374_510--Hb_003371_280 Hb_002374_510--Hb_113766_010 Hb_001269_660 Hb_001269_660 Hb_002374_510--Hb_001269_660 Hb_002370_020 Hb_002370_020 Hb_002374_510--Hb_002370_020 Hb_012395_060 Hb_012395_060 Hb_002374_510--Hb_012395_060 Hb_001269_580 Hb_001269_580 Hb_009122_010--Hb_001269_580 Hb_001410_080 Hb_001410_080 Hb_009122_010--Hb_001410_080 Hb_008304_050 Hb_008304_050 Hb_009122_010--Hb_008304_050 Hb_009122_010--Hb_002750_040 Hb_009122_010--Hb_113766_010 Hb_186765_010 Hb_186765_010 Hb_001396_130--Hb_186765_010 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_000377_130 Hb_000377_130 Hb_001396_130--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_001396_130--Hb_006755_030 Hb_044380_010 Hb_044380_010 Hb_001396_130--Hb_044380_010 Hb_000207_240 Hb_000207_240 Hb_001396_130--Hb_000207_240 Hb_179138_010 Hb_179138_010 Hb_003983_010--Hb_179138_010 Hb_159809_080 Hb_159809_080 Hb_003983_010--Hb_159809_080 Hb_000254_060 Hb_000254_060 Hb_003983_010--Hb_000254_060 Hb_003983_010--Hb_094437_030 Hb_003983_010--Hb_008304_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0769854 0.849236 0.435529 7.77105 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.21132 5.54208

CAGE analysis