Hb_003983_010

Information

Type -
Description -
Location Contig3983: 39033-42450
Sequence    

Annotation

kegg
ID rcu:RCOM_0920670
description serine/threonine-protein kinase bri1, putative (EC:1.3.1.74)
nr
ID XP_002515403.1
description serine/threonine-protein kinase bri1, putative [Ricinus communis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9RNT4
description Serine/threonine-protein kinase bri1, putative OS=Ricinus communis GN=RCOM_0920670 PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003983_010 0.0 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
2 Hb_179138_010 0.0815408725 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_159809_080 0.1166254565 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_090390_010 0.1345865394 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
5 Hb_000254_060 0.144736017 - - conserved hypothetical protein [Ricinus communis]
6 Hb_094437_030 0.1452827033 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
7 Hb_008304_050 0.1547716938 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
8 Hb_004893_010 0.1589011414 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
9 Hb_004785_090 0.1679305127 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
10 Hb_001778_040 0.1696205862 - - hypothetical protein VITISV_021035 [Vitis vinifera]
11 Hb_001174_020 0.171315927 - - -
12 Hb_026198_020 0.1716209028 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
13 Hb_011849_020 0.1743132763 - - dioxygenase family protein [Populus trichocarpa]
14 Hb_000009_430 0.1744372161 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009122_010 0.1749964533 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_027472_190 0.1760730594 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_001622_020 0.1767451438 - - -
18 Hb_001221_470 0.1775500102 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
19 Hb_016564_050 0.178170454 - - -
20 Hb_001277_380 0.1782489042 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_003983_010 Hb_003983_010 Hb_179138_010 Hb_179138_010 Hb_003983_010--Hb_179138_010 Hb_159809_080 Hb_159809_080 Hb_003983_010--Hb_159809_080 Hb_090390_010 Hb_090390_010 Hb_003983_010--Hb_090390_010 Hb_000254_060 Hb_000254_060 Hb_003983_010--Hb_000254_060 Hb_094437_030 Hb_094437_030 Hb_003983_010--Hb_094437_030 Hb_008304_050 Hb_008304_050 Hb_003983_010--Hb_008304_050 Hb_179138_010--Hb_159809_080 Hb_001174_020 Hb_001174_020 Hb_179138_010--Hb_001174_020 Hb_000011_320 Hb_000011_320 Hb_179138_010--Hb_000011_320 Hb_011849_020 Hb_011849_020 Hb_179138_010--Hb_011849_020 Hb_179138_010--Hb_008304_050 Hb_159809_080--Hb_000011_320 Hb_159809_080--Hb_008304_050 Hb_159809_080--Hb_001174_020 Hb_159809_080--Hb_011849_020 Hb_026198_020 Hb_026198_020 Hb_090390_010--Hb_026198_020 Hb_090390_010--Hb_094437_030 Hb_002374_510 Hb_002374_510 Hb_090390_010--Hb_002374_510 Hb_009122_010 Hb_009122_010 Hb_090390_010--Hb_009122_010 Hb_001396_130 Hb_001396_130 Hb_090390_010--Hb_001396_130 Hb_001622_020 Hb_001622_020 Hb_000254_060--Hb_001622_020 Hb_001778_040 Hb_001778_040 Hb_000254_060--Hb_001778_040 Hb_168319_060 Hb_168319_060 Hb_000254_060--Hb_168319_060 Hb_065521_010 Hb_065521_010 Hb_000254_060--Hb_065521_010 Hb_029510_090 Hb_029510_090 Hb_000254_060--Hb_029510_090 Hb_000054_130 Hb_000054_130 Hb_000254_060--Hb_000054_130 Hb_027472_190 Hb_027472_190 Hb_094437_030--Hb_027472_190 Hb_000392_490 Hb_000392_490 Hb_094437_030--Hb_000392_490 Hb_094437_030--Hb_001396_130 Hb_000309_070 Hb_000309_070 Hb_094437_030--Hb_000309_070 Hb_003714_030 Hb_003714_030 Hb_094437_030--Hb_003714_030 Hb_000389_100 Hb_000389_100 Hb_008304_050--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_008304_050--Hb_004893_010 Hb_003633_170 Hb_003633_170 Hb_008304_050--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_008304_050--Hb_002566_020 Hb_031224_010 Hb_031224_010 Hb_008304_050--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_008304_050--Hb_002783_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0215873 0.00606267 0.173368 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.104492 0.124119

CAGE analysis