Hb_000377_130

Information

Type -
Description -
Location Contig377: 207421-210728
Sequence    

Annotation

kegg
ID pop:POPTR_0016s00790g
description POPTRDRAFT_776772; hypothetical protein
nr
ID XP_002322501.2
description hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IH16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00790g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_130 0.0 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
2 Hb_006755_030 0.0552802904 - - BURP domain-containing protein, putative [Theobroma cacao]
3 Hb_011519_040 0.0642143349 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
4 Hb_186765_010 0.0665466871 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
5 Hb_000959_110 0.0841971391 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
6 Hb_002925_060 0.1015618887 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
7 Hb_000620_050 0.1035954291 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
8 Hb_001396_130 0.1053429933 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000334_030 0.1076690597 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004930_020 0.1077714075 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
11 Hb_004117_230 0.1096175949 - - lipid transfer precursor protein [Hevea brasiliensis]
12 Hb_184074_010 0.1096559764 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
13 Hb_001408_200 0.1126990022 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
14 Hb_001712_030 0.1146177187 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
15 Hb_091236_010 0.1158052108 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
16 Hb_000193_320 0.1169089142 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000749_280 0.1195962733 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
18 Hb_000176_050 0.1217309872 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
19 Hb_004920_150 0.1235756471 - - conserved hypothetical protein [Ricinus communis]
20 Hb_044380_010 0.1246263151 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]

Gene co-expression network

sample Hb_000377_130 Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_000377_130--Hb_006755_030 Hb_011519_040 Hb_011519_040 Hb_000377_130--Hb_011519_040 Hb_186765_010 Hb_186765_010 Hb_000377_130--Hb_186765_010 Hb_000959_110 Hb_000959_110 Hb_000377_130--Hb_000959_110 Hb_002925_060 Hb_002925_060 Hb_000377_130--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_000377_130--Hb_000620_050 Hb_006755_030--Hb_000959_110 Hb_006755_030--Hb_011519_040 Hb_006755_030--Hb_186765_010 Hb_184074_010 Hb_184074_010 Hb_006755_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_006755_030--Hb_000334_030 Hb_011519_040--Hb_186765_010 Hb_091236_010 Hb_091236_010 Hb_011519_040--Hb_091236_010 Hb_011519_040--Hb_000620_050 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200 Hb_001396_130 Hb_001396_130 Hb_186765_010--Hb_001396_130 Hb_001097_140 Hb_001097_140 Hb_186765_010--Hb_001097_140 Hb_186765_010--Hb_002925_060 Hb_004930_020 Hb_004930_020 Hb_000959_110--Hb_004930_020 Hb_000959_110--Hb_184074_010 Hb_000959_110--Hb_000334_030 Hb_000959_110--Hb_186765_010 Hb_002925_060--Hb_001408_200 Hb_002925_060--Hb_000620_050 Hb_182869_010 Hb_182869_010 Hb_002925_060--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_002925_060--Hb_003058_240 Hb_047612_010 Hb_047612_010 Hb_002925_060--Hb_047612_010 Hb_000402_060 Hb_000402_060 Hb_002925_060--Hb_000402_060 Hb_000620_050--Hb_184074_010 Hb_003371_280 Hb_003371_280 Hb_000620_050--Hb_003371_280 Hb_000620_050--Hb_182869_010 Hb_000620_050--Hb_003058_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0304201 1.09013 1.05777 19.2237 0.0611095 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.87429 18.6298

CAGE analysis