Hb_091236_010

Information

Type -
Description -
Location Contig91236: 5271-6892
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12290g
description POPTRDRAFT_780716; hypothetical protein
nr
ID XP_002326036.2
description hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
swissprot
ID B6VJS4
description Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2
trembl
ID B9IQS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12290g PE=4 SV=2
Gene Ontology
ID GO:0016206
description trans-resveratrol di-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091236_010 0.0 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
2 Hb_011519_040 0.0865348956 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
3 Hb_000749_280 0.0907589463 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
4 Hb_002400_300 0.0957388337 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
5 Hb_186765_010 0.1152265315 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
6 Hb_000377_130 0.1158052108 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
7 Hb_006755_030 0.1198443319 - - BURP domain-containing protein, putative [Theobroma cacao]
8 Hb_000122_230 0.1289659994 - - laccase, putative [Ricinus communis]
9 Hb_002374_510 0.1294652991 - - Esterase precursor, putative [Ricinus communis]
10 Hb_000620_050 0.1333416631 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
11 Hb_002245_060 0.1343277261 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
12 Hb_001408_200 0.1351862795 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
13 Hb_000402_060 0.1370418067 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
14 Hb_002925_060 0.1372244752 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
15 Hb_121624_010 0.1387550111 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
16 Hb_044380_010 0.1391235386 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
17 Hb_011501_020 0.1410950187 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
18 Hb_022973_010 0.1430666358 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
19 Hb_025623_010 0.14327617 - - -
20 Hb_003371_280 0.1445374033 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_091236_010 Hb_091236_010 Hb_011519_040 Hb_011519_040 Hb_091236_010--Hb_011519_040 Hb_000749_280 Hb_000749_280 Hb_091236_010--Hb_000749_280 Hb_002400_300 Hb_002400_300 Hb_091236_010--Hb_002400_300 Hb_186765_010 Hb_186765_010 Hb_091236_010--Hb_186765_010 Hb_000377_130 Hb_000377_130 Hb_091236_010--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_091236_010--Hb_006755_030 Hb_011519_040--Hb_000377_130 Hb_011519_040--Hb_186765_010 Hb_011519_040--Hb_006755_030 Hb_000620_050 Hb_000620_050 Hb_011519_040--Hb_000620_050 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200 Hb_000749_280--Hb_011519_040 Hb_000402_060 Hb_000402_060 Hb_000749_280--Hb_000402_060 Hb_158092_090 Hb_158092_090 Hb_000749_280--Hb_158092_090 Hb_000749_280--Hb_000377_130 Hb_000749_280--Hb_000620_050 Hb_006920_020 Hb_006920_020 Hb_002400_300--Hb_006920_020 Hb_000122_230 Hb_000122_230 Hb_002400_300--Hb_000122_230 Hb_001832_170 Hb_001832_170 Hb_002400_300--Hb_001832_170 Hb_000975_170 Hb_000975_170 Hb_002400_300--Hb_000975_170 Hb_002245_060 Hb_002245_060 Hb_002400_300--Hb_002245_060 Hb_001396_130 Hb_001396_130 Hb_186765_010--Hb_001396_130 Hb_186765_010--Hb_000377_130 Hb_186765_010--Hb_006755_030 Hb_001097_140 Hb_001097_140 Hb_186765_010--Hb_001097_140 Hb_002925_060 Hb_002925_060 Hb_186765_010--Hb_002925_060 Hb_000377_130--Hb_006755_030 Hb_000959_110 Hb_000959_110 Hb_000377_130--Hb_000959_110 Hb_000377_130--Hb_002925_060 Hb_000377_130--Hb_000620_050 Hb_006755_030--Hb_000959_110 Hb_184074_010 Hb_184074_010 Hb_006755_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_006755_030--Hb_000334_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0783682 0.213998 2.32433 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0447662 0.0352116 0 0.395587 2.53827

CAGE analysis