Hb_000749_280

Information

Type -
Description -
Location Contig749: 286705-287795
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41400g
description hypothetical protein
nr
ID XP_011042492.1
description PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9N1K3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41400g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56811: 288468-290660
cDNA
(Sanger)
(ID:Location)		 043_F20.ab1: 288771-290614

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_280 0.0 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
2 Hb_091236_010 0.0907589463 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
3 Hb_011519_040 0.0992447988 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
4 Hb_000402_060 0.1072909347 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
5 Hb_158092_090 0.1179884922 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000377_130 0.1195962733 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
7 Hb_000620_050 0.1240189999 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
8 Hb_001408_200 0.1246126102 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
9 Hb_006755_030 0.1275502814 - - BURP domain-containing protein, putative [Theobroma cacao]
10 Hb_002400_300 0.1286834697 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
11 Hb_000122_230 0.1345635081 - - laccase, putative [Ricinus communis]
12 Hb_002925_060 0.1357716435 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
13 Hb_000866_400 0.1366340837 - - -
14 Hb_121624_010 0.1376871527 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
15 Hb_011501_020 0.1378618488 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
16 Hb_186765_010 0.1379286533 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
17 Hb_025623_010 0.1384933146 - - -
18 Hb_026317_040 0.1387160254 - - hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
19 Hb_003058_240 0.1405397879 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
20 Hb_002245_060 0.1407193321 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_280 Hb_000749_280 Hb_091236_010 Hb_091236_010 Hb_000749_280--Hb_091236_010 Hb_011519_040 Hb_011519_040 Hb_000749_280--Hb_011519_040 Hb_000402_060 Hb_000402_060 Hb_000749_280--Hb_000402_060 Hb_158092_090 Hb_158092_090 Hb_000749_280--Hb_158092_090 Hb_000377_130 Hb_000377_130 Hb_000749_280--Hb_000377_130 Hb_000620_050 Hb_000620_050 Hb_000749_280--Hb_000620_050 Hb_091236_010--Hb_011519_040 Hb_002400_300 Hb_002400_300 Hb_091236_010--Hb_002400_300 Hb_186765_010 Hb_186765_010 Hb_091236_010--Hb_186765_010 Hb_091236_010--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_091236_010--Hb_006755_030 Hb_011519_040--Hb_000377_130 Hb_011519_040--Hb_186765_010 Hb_011519_040--Hb_006755_030 Hb_011519_040--Hb_000620_050 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200 Hb_000402_060--Hb_001408_200 Hb_010883_160 Hb_010883_160 Hb_000402_060--Hb_010883_160 Hb_003058_240 Hb_003058_240 Hb_000402_060--Hb_003058_240 Hb_000654_020 Hb_000654_020 Hb_000402_060--Hb_000654_020 Hb_002809_180 Hb_002809_180 Hb_000402_060--Hb_002809_180 Hb_001397_020 Hb_001397_020 Hb_000402_060--Hb_001397_020 Hb_000416_020 Hb_000416_020 Hb_158092_090--Hb_000416_020 Hb_002311_010 Hb_002311_010 Hb_158092_090--Hb_002311_010 Hb_001014_180 Hb_001014_180 Hb_158092_090--Hb_001014_180 Hb_038927_020 Hb_038927_020 Hb_158092_090--Hb_038927_020 Hb_007281_010 Hb_007281_010 Hb_158092_090--Hb_007281_010 Hb_001712_030 Hb_001712_030 Hb_158092_090--Hb_001712_030 Hb_000377_130--Hb_006755_030 Hb_000377_130--Hb_186765_010 Hb_000959_110 Hb_000959_110 Hb_000377_130--Hb_000959_110 Hb_002925_060 Hb_002925_060 Hb_000377_130--Hb_002925_060 Hb_000377_130--Hb_000620_050 Hb_000620_050--Hb_002925_060 Hb_184074_010 Hb_184074_010 Hb_000620_050--Hb_184074_010 Hb_003371_280 Hb_003371_280 Hb_000620_050--Hb_003371_280 Hb_182869_010 Hb_182869_010 Hb_000620_050--Hb_182869_010 Hb_000620_050--Hb_003058_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0426399 0.275394 2.87679 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0916014 0 0.302415 2.96438

CAGE analysis