Hb_000959_110

Information

Type transcription factor
Description TF Family: WRKY
Location Contig959: 105380-109066
Sequence    

Annotation

kegg
ID vvi:100247547
description probable WRKY transcription factor 13
nr
ID XP_002279024.1
description PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
swissprot
ID Q9SVB7
description Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1
trembl
ID D7SW85
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01840 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63638: 105150-105466 , PASA_asmbl_63639: 106044-109000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_110 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
2 Hb_006755_030 0.0696667254 - - BURP domain-containing protein, putative [Theobroma cacao]
3 Hb_004930_020 0.0757933802 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
4 Hb_184074_010 0.0811055808 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
5 Hb_000334_030 0.0829573891 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000377_130 0.0841971391 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
7 Hb_186765_010 0.1190284286 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
8 Hb_011519_040 0.1198487478 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
9 Hb_000620_050 0.1209608703 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
10 Hb_000193_320 0.1242878605 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001396_130 0.1255315792 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001500_090 0.1274075232 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001019_030 0.1281077127 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
14 Hb_001976_100 0.1283006619 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
15 Hb_012077_010 0.1290412952 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_002750_030 0.1341612683 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
17 Hb_000173_140 0.1399954812 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
18 Hb_004117_230 0.1402419613 - - lipid transfer precursor protein [Hevea brasiliensis]
19 Hb_002925_060 0.1417498509 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
20 Hb_001520_030 0.1420682863 transcription factor TF Family: MYB PREDICTED: trichome differentiation protein GL1-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000959_110 Hb_000959_110 Hb_006755_030 Hb_006755_030 Hb_000959_110--Hb_006755_030 Hb_004930_020 Hb_004930_020 Hb_000959_110--Hb_004930_020 Hb_184074_010 Hb_184074_010 Hb_000959_110--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_000959_110--Hb_000334_030 Hb_000377_130 Hb_000377_130 Hb_000959_110--Hb_000377_130 Hb_186765_010 Hb_186765_010 Hb_000959_110--Hb_186765_010 Hb_006755_030--Hb_000377_130 Hb_011519_040 Hb_011519_040 Hb_006755_030--Hb_011519_040 Hb_006755_030--Hb_186765_010 Hb_006755_030--Hb_184074_010 Hb_006755_030--Hb_000334_030 Hb_004930_020--Hb_000334_030 Hb_004930_020--Hb_184074_010 Hb_001976_100 Hb_001976_100 Hb_004930_020--Hb_001976_100 Hb_000009_250 Hb_000009_250 Hb_004930_020--Hb_000009_250 Hb_001019_030 Hb_001019_030 Hb_004930_020--Hb_001019_030 Hb_184074_010--Hb_000334_030 Hb_000620_050 Hb_000620_050 Hb_184074_010--Hb_000620_050 Hb_003371_280 Hb_003371_280 Hb_184074_010--Hb_003371_280 Hb_001500_090 Hb_001500_090 Hb_000334_030--Hb_001500_090 Hb_002750_030 Hb_002750_030 Hb_000334_030--Hb_002750_030 Hb_000193_320 Hb_000193_320 Hb_000334_030--Hb_000193_320 Hb_000377_130--Hb_011519_040 Hb_000377_130--Hb_186765_010 Hb_002925_060 Hb_002925_060 Hb_000377_130--Hb_002925_060 Hb_000377_130--Hb_000620_050 Hb_001396_130 Hb_001396_130 Hb_186765_010--Hb_001396_130 Hb_186765_010--Hb_011519_040 Hb_001097_140 Hb_001097_140 Hb_186765_010--Hb_001097_140 Hb_186765_010--Hb_002925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0897449 0.96489 0.391207 19.208 0.0280618 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0541408 0 1.95139 13.8899

CAGE analysis