Hb_000975_170

Information

Type -
Description -
Location Contig975: 114101-118722
Sequence    

Annotation

kegg
ID cic:CICLE_v10028768mg
description hypothetical protein
nr
ID XP_012065004.1
description PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZV36
description UDP-glucuronic acid decarboxylase 6 OS=Arabidopsis thaliana GN=UXS6 PE=2 SV=1
trembl
ID A0A067LAK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05680 PE=4 SV=1
Gene Ontology
ID GO:0008460
description udp-glucuronic acid decarboxylase 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64001: 114277-118956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_170 0.0 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
2 Hb_002400_300 0.1170231931 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
3 Hb_182424_020 0.1207083835 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
4 Hb_000309_070 0.1541741675 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
5 Hb_114917_010 0.1559842655 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
6 Hb_001221_240 0.1575753901 - - conserved hypothetical protein [Ricinus communis]
7 Hb_031330_020 0.1604499454 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
8 Hb_159308_020 0.1607815985 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
9 Hb_004957_050 0.1609576934 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
10 Hb_001832_170 0.1613057945 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
11 Hb_046117_030 0.1619322461 - - sialyltransferase, putative [Ricinus communis]
12 Hb_003052_080 0.166442281 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
13 Hb_006920_020 0.1673674673 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_001916_150 0.1679321092 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
15 Hb_000552_010 0.167977176 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
16 Hb_000920_100 0.169959506 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_091236_010 0.1738933076 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
18 Hb_189208_040 0.1765438786 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
19 Hb_000265_030 0.1779407364 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
20 Hb_002759_050 0.178212252 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_170 Hb_000975_170 Hb_002400_300 Hb_002400_300 Hb_000975_170--Hb_002400_300 Hb_182424_020 Hb_182424_020 Hb_000975_170--Hb_182424_020 Hb_000309_070 Hb_000309_070 Hb_000975_170--Hb_000309_070 Hb_114917_010 Hb_114917_010 Hb_000975_170--Hb_114917_010 Hb_001221_240 Hb_001221_240 Hb_000975_170--Hb_001221_240 Hb_031330_020 Hb_031330_020 Hb_000975_170--Hb_031330_020 Hb_091236_010 Hb_091236_010 Hb_002400_300--Hb_091236_010 Hb_006920_020 Hb_006920_020 Hb_002400_300--Hb_006920_020 Hb_000122_230 Hb_000122_230 Hb_002400_300--Hb_000122_230 Hb_001832_170 Hb_001832_170 Hb_002400_300--Hb_001832_170 Hb_002245_060 Hb_002245_060 Hb_002400_300--Hb_002245_060 Hb_181463_020 Hb_181463_020 Hb_182424_020--Hb_181463_020 Hb_000230_170 Hb_000230_170 Hb_182424_020--Hb_000230_170 Hb_046117_030 Hb_046117_030 Hb_182424_020--Hb_046117_030 Hb_182424_020--Hb_031330_020 Hb_082550_010 Hb_082550_010 Hb_182424_020--Hb_082550_010 Hb_000392_490 Hb_000392_490 Hb_000309_070--Hb_000392_490 Hb_000963_120 Hb_000963_120 Hb_000309_070--Hb_000963_120 Hb_004374_030 Hb_004374_030 Hb_000309_070--Hb_004374_030 Hb_002119_110 Hb_002119_110 Hb_000309_070--Hb_002119_110 Hb_006992_010 Hb_006992_010 Hb_000309_070--Hb_006992_010 Hb_002374_510 Hb_002374_510 Hb_000309_070--Hb_002374_510 Hb_002613_040 Hb_002613_040 Hb_114917_010--Hb_002613_040 Hb_003097_220 Hb_003097_220 Hb_114917_010--Hb_003097_220 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_020378_020 Hb_020378_020 Hb_114917_010--Hb_020378_020 Hb_028396_020 Hb_028396_020 Hb_114917_010--Hb_028396_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_042463_010 Hb_042463_010 Hb_001221_240--Hb_042463_010 Hb_159308_020 Hb_159308_020 Hb_001221_240--Hb_159308_020 Hb_000552_010 Hb_000552_010 Hb_001221_240--Hb_000552_010 Hb_001221_240--Hb_002400_300 Hb_001221_240--Hb_001832_170 Hb_000300_680 Hb_000300_680 Hb_031330_020--Hb_000300_680 Hb_031330_020--Hb_001916_150 Hb_003778_020 Hb_003778_020 Hb_031330_020--Hb_003778_020 Hb_000975_050 Hb_000975_050 Hb_031330_020--Hb_000975_050 Hb_134813_010 Hb_134813_010 Hb_031330_020--Hb_134813_010 Hb_011053_020 Hb_011053_020 Hb_031330_020--Hb_011053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245573 5.11408 9.7079 44.9299 0.226005 0.105413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36691 2.42636 3.86945 14.8354 71.6694

CAGE analysis