Hb_010217_020

Information

Type -
Description -
Location Contig10217: 35876-36514
Sequence    

Annotation

kegg
ID cic:CICLE_v10000921mg
description hypothetical protein
nr
ID AEM63594.1
description cinnamate 4-hydroxylase [Leucaena leucocephala]
swissprot
ID O24312
description Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1
trembl
ID G3D5B5
description Cinnamate 4-hydroxylase OS=Leucaena leucocephala GN=C4H PE=2 SV=1
Gene Ontology
ID GO:0005506
description cinnamate 4-hydroxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010217_020 0.0 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
2 Hb_006618_100 0.0599712843 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
3 Hb_000953_110 0.0742537663 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
4 Hb_004158_040 0.0774428517 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
5 Hb_001454_350 0.0870436181 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
6 Hb_000349_280 0.0871361163 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007545_220 0.0956442671 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
8 Hb_001579_160 0.0958433691 - - PREDICTED: kininogen-1-like [Jatropha curcas]
9 Hb_145975_010 0.0991989591 - - cytochrome P450, putative [Ricinus communis]
10 Hb_005588_050 0.1022362642 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001541_170 0.1033470484 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
12 Hb_000422_060 0.1067590889 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
13 Hb_000853_140 0.1078052021 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
14 Hb_003582_030 0.1089945904 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
15 Hb_005183_070 0.1103836199 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
16 Hb_001722_110 0.1109051895 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
17 Hb_180980_010 0.1154466515 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
18 Hb_000197_260 0.1179551991 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
19 Hb_011314_010 0.1187897102 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
20 Hb_007919_010 0.1194629089 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010217_020 Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_010217_020--Hb_006618_100 Hb_000953_110 Hb_000953_110 Hb_010217_020--Hb_000953_110 Hb_004158_040 Hb_004158_040 Hb_010217_020--Hb_004158_040 Hb_001454_350 Hb_001454_350 Hb_010217_020--Hb_001454_350 Hb_000349_280 Hb_000349_280 Hb_010217_020--Hb_000349_280 Hb_007545_220 Hb_007545_220 Hb_010217_020--Hb_007545_220 Hb_145975_010 Hb_145975_010 Hb_006618_100--Hb_145975_010 Hb_006618_100--Hb_000349_280 Hb_004757_010 Hb_004757_010 Hb_006618_100--Hb_004757_010 Hb_006618_100--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_006618_100--Hb_001579_160 Hb_000953_110--Hb_007545_220 Hb_000853_140 Hb_000853_140 Hb_000953_110--Hb_000853_140 Hb_000197_260 Hb_000197_260 Hb_000953_110--Hb_000197_260 Hb_000953_110--Hb_004158_040 Hb_005183_070 Hb_005183_070 Hb_000953_110--Hb_005183_070 Hb_004158_040--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_004158_040--Hb_001722_110 Hb_005588_050 Hb_005588_050 Hb_004158_040--Hb_005588_050 Hb_004158_040--Hb_001454_350 Hb_001454_350--Hb_001579_160 Hb_001454_350--Hb_001722_110 Hb_000188_040 Hb_000188_040 Hb_001454_350--Hb_000188_040 Hb_009421_060 Hb_009421_060 Hb_001454_350--Hb_009421_060 Hb_000422_060 Hb_000422_060 Hb_000349_280--Hb_000422_060 Hb_012217_010 Hb_012217_010 Hb_000349_280--Hb_012217_010 Hb_032260_040 Hb_032260_040 Hb_000349_280--Hb_032260_040 Hb_007441_100 Hb_007441_100 Hb_000349_280--Hb_007441_100 Hb_007545_220--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_007545_220--Hb_000599_160 Hb_007545_220--Hb_005588_050 Hb_007545_220--Hb_004158_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397488 3.97479 0.84301 21.7983 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.650617 4.38328

CAGE analysis