Hb_012217_010

Information

Type -
Description -
Location Contig12217: 35043-39056
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15500g
description POPTRDRAFT_575601; lectin family protein
nr
ID XP_012089525.1
description PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
swissprot
ID Q9SA16
description Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana GN=PP2A9 PE=2 SV=1
trembl
ID A0A067JJY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06781: 35043-39073
cDNA
(Sanger)
(ID:Location)		 007_L13.ab1: 35043-39073 , 032_D11.ab1: 35043-39073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012217_010 0.0 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
2 Hb_011930_090 0.0610033308 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
3 Hb_007441_100 0.0693485125 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
4 Hb_032260_040 0.0757966277 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000847_110 0.0822499026 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001541_170 0.083772944 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
7 Hb_019299_010 0.0875717126 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000438_180 0.0913149035 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_000349_280 0.0946785214 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001269_430 0.0963567393 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
11 Hb_004757_010 0.0967373837 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
12 Hb_000087_160 0.0970053166 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_032299_020 0.0976120428 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_000201_050 0.0981420225 - - -
15 Hb_000098_230 0.0987872933 - - Potassium channel AKT2/3, putative [Ricinus communis]
16 Hb_001401_110 0.1043467261 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
17 Hb_006618_100 0.1044415705 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
18 Hb_002186_170 0.1056537272 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
19 Hb_000422_060 0.1058911171 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
20 Hb_000920_120 0.1060567075 - - -

Gene co-expression network

sample Hb_012217_010 Hb_012217_010 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_032260_040 Hb_032260_040 Hb_012217_010--Hb_032260_040 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010 Hb_011930_090--Hb_019299_010 Hb_000087_160 Hb_000087_160 Hb_011930_090--Hb_000087_160 Hb_001269_430 Hb_001269_430 Hb_011930_090--Hb_001269_430 Hb_009851_120 Hb_009851_120 Hb_011930_090--Hb_009851_120 Hb_000438_180 Hb_000438_180 Hb_011930_090--Hb_000438_180 Hb_007441_100--Hb_000847_110 Hb_000378_030 Hb_000378_030 Hb_007441_100--Hb_000378_030 Hb_000098_230 Hb_000098_230 Hb_007441_100--Hb_000098_230 Hb_001418_050 Hb_001418_050 Hb_007441_100--Hb_001418_050 Hb_007441_100--Hb_001541_170 Hb_003711_050 Hb_003711_050 Hb_032260_040--Hb_003711_050 Hb_008406_170 Hb_008406_170 Hb_032260_040--Hb_008406_170 Hb_000201_050 Hb_000201_050 Hb_032260_040--Hb_000201_050 Hb_021443_010 Hb_021443_010 Hb_032260_040--Hb_021443_010 Hb_000853_140 Hb_000853_140 Hb_032260_040--Hb_000853_140 Hb_000847_110--Hb_001541_170 Hb_000847_110--Hb_001418_050 Hb_000847_110--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_000847_110--Hb_000087_190 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_001541_170--Hb_000098_230 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040 Hb_019299_010--Hb_009851_120 Hb_187906_010 Hb_187906_010 Hb_019299_010--Hb_187906_010 Hb_019299_010--Hb_000087_160 Hb_001401_110 Hb_001401_110 Hb_019299_010--Hb_001401_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90822 101.807 38.4154 680.1 4.60566 5.37589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668505 0.328449 0 4.1738 70.4706

CAGE analysis