Hb_011930_090

Information

Type -
Description -
Location Contig11930: 71423-72346
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19870g
description POPTRDRAFT_420455; hypothetical protein
nr
ID XP_012091966.1
description PREDICTED: thioredoxin H7-like [Jatropha curcas]
swissprot
ID Q9XIF4
description Thioredoxin H7 OS=Arabidopsis thaliana GN=TRX7 PE=2 SV=1
trembl
ID A0A067JP10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21715 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin h2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05711: 71423-72390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_090 0.0 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
2 Hb_019299_010 0.0541007558 - - zinc finger protein, putative [Ricinus communis]
3 Hb_012217_010 0.0610033308 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
4 Hb_000087_160 0.0773576477 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001269_430 0.0777681437 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
6 Hb_009851_120 0.0791337423 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
7 Hb_000438_180 0.082487106 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_000754_010 0.0865861848 - - unnamed protein product [Vitis vinifera]
9 Hb_006061_020 0.0914248536 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
10 Hb_001401_110 0.0921217887 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
11 Hb_159791_010 0.0961777148 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
12 Hb_187906_010 0.0977094199 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
13 Hb_032260_040 0.0980169494 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000025_150 0.0984252257 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
15 Hb_180293_010 0.0994996607 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
16 Hb_001584_250 0.1000658382 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
17 Hb_004807_070 0.1004046629 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
18 Hb_006018_020 0.1064985365 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007441_100 0.1070417054 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
20 Hb_004757_010 0.1077685318 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]

Gene co-expression network

sample Hb_011930_090 Hb_011930_090 Hb_019299_010 Hb_019299_010 Hb_011930_090--Hb_019299_010 Hb_012217_010 Hb_012217_010 Hb_011930_090--Hb_012217_010 Hb_000087_160 Hb_000087_160 Hb_011930_090--Hb_000087_160 Hb_001269_430 Hb_001269_430 Hb_011930_090--Hb_001269_430 Hb_009851_120 Hb_009851_120 Hb_011930_090--Hb_009851_120 Hb_000438_180 Hb_000438_180 Hb_011930_090--Hb_000438_180 Hb_019299_010--Hb_009851_120 Hb_187906_010 Hb_187906_010 Hb_019299_010--Hb_187906_010 Hb_019299_010--Hb_000087_160 Hb_019299_010--Hb_012217_010 Hb_001401_110 Hb_001401_110 Hb_019299_010--Hb_001401_110 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_032260_040 Hb_032260_040 Hb_012217_010--Hb_032260_040 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_000959_170 Hb_000959_170 Hb_000087_160--Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000087_160--Hb_159791_010 Hb_000087_160--Hb_187906_010 Hb_000230_220 Hb_000230_220 Hb_000087_160--Hb_000230_220 Hb_001343_060 Hb_001343_060 Hb_001269_430--Hb_001343_060 Hb_004807_070 Hb_004807_070 Hb_001269_430--Hb_004807_070 Hb_001269_430--Hb_001401_110 Hb_001269_430--Hb_000438_180 Hb_011344_110 Hb_011344_110 Hb_001269_430--Hb_011344_110 Hb_000999_060 Hb_000999_060 Hb_009851_120--Hb_000999_060 Hb_074100_010 Hb_074100_010 Hb_009851_120--Hb_074100_010 Hb_001584_250 Hb_001584_250 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080 Hb_000438_180--Hb_001401_110 Hb_000438_180--Hb_187906_010 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45094 81.003 26.2562 644.015 3.59844 4.06202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530474 0.0595798 0.106864 1.0887 43.2533

CAGE analysis