Hb_011344_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig11344: 81122-83056
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11360g
description POPTRDRAFT_413758; myb family transcription factor family protein
nr
ID XP_012087116.1
description PREDICTED: protein ODORANT1 [Jatropha curcas]
swissprot
ID Q50EX6
description Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1
trembl
ID A0A067JNY9
description MYB family protein OS=Jatropha curcas GN=JCGZ_20768 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein odorant1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_110 0.0 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
2 Hb_000244_290 0.0419974056 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
3 Hb_001343_060 0.0629422137 - - Cytochrome P450 [Theobroma cacao]
4 Hb_000628_070 0.0637521082 - - -
5 Hb_014881_020 0.0664230338 - - Protein P21, putative [Ricinus communis]
6 Hb_001232_170 0.0682700808 - - sulfate transporter, putative [Ricinus communis]
7 Hb_006018_020 0.0707833377 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001141_430 0.0718088441 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
9 Hb_000816_170 0.076227826 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
10 Hb_000243_240 0.0766059678 - - cytochrome P450 family protein [Populus trichocarpa]
11 Hb_001712_010 0.077275603 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
12 Hb_001269_430 0.0803290053 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
13 Hb_000816_090 0.0850038478 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
14 Hb_001157_120 0.0873512489 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
15 Hb_004807_070 0.0874865519 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
16 Hb_159791_010 0.0909541194 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
17 Hb_001123_080 0.0911387249 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000327_350 0.0935131739 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
19 Hb_005396_020 0.0955857702 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
20 Hb_000754_010 0.1007843355 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_011344_110 Hb_011344_110 Hb_000244_290 Hb_000244_290 Hb_011344_110--Hb_000244_290 Hb_001343_060 Hb_001343_060 Hb_011344_110--Hb_001343_060 Hb_000628_070 Hb_000628_070 Hb_011344_110--Hb_000628_070 Hb_014881_020 Hb_014881_020 Hb_011344_110--Hb_014881_020 Hb_001232_170 Hb_001232_170 Hb_011344_110--Hb_001232_170 Hb_006018_020 Hb_006018_020 Hb_011344_110--Hb_006018_020 Hb_000244_290--Hb_000628_070 Hb_000243_240 Hb_000243_240 Hb_000244_290--Hb_000243_240 Hb_000327_350 Hb_000327_350 Hb_000244_290--Hb_000327_350 Hb_000816_090 Hb_000816_090 Hb_000244_290--Hb_000816_090 Hb_001157_120 Hb_001157_120 Hb_000244_290--Hb_001157_120 Hb_001141_430 Hb_001141_430 Hb_001343_060--Hb_001141_430 Hb_159791_010 Hb_159791_010 Hb_001343_060--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_001343_060--Hb_004757_010 Hb_001269_430 Hb_001269_430 Hb_001343_060--Hb_001269_430 Hb_000816_170 Hb_000816_170 Hb_001343_060--Hb_000816_170 Hb_000628_070--Hb_001232_170 Hb_000628_070--Hb_006018_020 Hb_001712_010 Hb_001712_010 Hb_000628_070--Hb_001712_010 Hb_005396_020 Hb_005396_020 Hb_000628_070--Hb_005396_020 Hb_001123_080 Hb_001123_080 Hb_014881_020--Hb_001123_080 Hb_014881_020--Hb_006018_020 Hb_000201_060 Hb_000201_060 Hb_014881_020--Hb_000201_060 Hb_014881_020--Hb_000816_170 Hb_014881_020--Hb_001232_170 Hb_001232_170--Hb_006018_020 Hb_001232_170--Hb_000816_170 Hb_001232_170--Hb_001123_080 Hb_006018_020--Hb_001123_080 Hb_000754_010 Hb_000754_010 Hb_006018_020--Hb_000754_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0997891 2.71101 0.842914 50.4979 0.109062 0.034442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.215095 5.14465

CAGE analysis