Hb_001232_170

Information

Type -
Description -
Location Contig1232: 115105-119173
Sequence    

Annotation

kegg
ID rcu:RCOM_0980400
description sulfate transporter, putative
nr
ID XP_002528191.1
description sulfate transporter, putative [Ricinus communis]
swissprot
ID Q9LW86
description Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1
trembl
ID B9SQC2
description Sulfate transporter, putative OS=Ricinus communis GN=RCOM_0980400 PE=4 SV=1
Gene Ontology
ID GO:0009506
description probable sulfate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07070: 114850-119005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_170 0.0 - - sulfate transporter, putative [Ricinus communis]
2 Hb_000628_070 0.0572373919 - - -
3 Hb_006018_020 0.0600635721 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000816_170 0.0680317772 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
5 Hb_011344_110 0.0682700808 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
6 Hb_001123_080 0.0683775974 - - conserved hypothetical protein [Ricinus communis]
7 Hb_014881_020 0.0761422654 - - Protein P21, putative [Ricinus communis]
8 Hb_159791_010 0.0779888508 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
9 Hb_000754_010 0.0784716448 - - unnamed protein product [Vitis vinifera]
10 Hb_004807_070 0.0790975824 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
11 Hb_000244_290 0.0802977586 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
12 Hb_001141_430 0.0803563329 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
13 Hb_001343_060 0.0814347737 - - Cytochrome P450 [Theobroma cacao]
14 Hb_001157_120 0.0867133479 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
15 Hb_000358_070 0.0882288336 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
16 Hb_006061_020 0.0882583494 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
17 Hb_000012_340 0.089043717 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
18 Hb_000201_060 0.0896347452 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
19 Hb_001712_010 0.0896482449 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
20 Hb_005396_020 0.0908643736 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]

Gene co-expression network

sample Hb_001232_170 Hb_001232_170 Hb_000628_070 Hb_000628_070 Hb_001232_170--Hb_000628_070 Hb_006018_020 Hb_006018_020 Hb_001232_170--Hb_006018_020 Hb_000816_170 Hb_000816_170 Hb_001232_170--Hb_000816_170 Hb_011344_110 Hb_011344_110 Hb_001232_170--Hb_011344_110 Hb_001123_080 Hb_001123_080 Hb_001232_170--Hb_001123_080 Hb_014881_020 Hb_014881_020 Hb_001232_170--Hb_014881_020 Hb_000244_290 Hb_000244_290 Hb_000628_070--Hb_000244_290 Hb_000628_070--Hb_011344_110 Hb_000628_070--Hb_006018_020 Hb_001712_010 Hb_001712_010 Hb_000628_070--Hb_001712_010 Hb_005396_020 Hb_005396_020 Hb_000628_070--Hb_005396_020 Hb_006018_020--Hb_001123_080 Hb_000754_010 Hb_000754_010 Hb_006018_020--Hb_000754_010 Hb_006018_020--Hb_014881_020 Hb_006018_020--Hb_011344_110 Hb_000358_070 Hb_000358_070 Hb_000816_170--Hb_000358_070 Hb_000012_340 Hb_000012_340 Hb_000816_170--Hb_000012_340 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_001343_060 Hb_001343_060 Hb_000816_170--Hb_001343_060 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060 Hb_011344_110--Hb_000244_290 Hb_011344_110--Hb_001343_060 Hb_011344_110--Hb_014881_020 Hb_001123_080--Hb_014881_020 Hb_001123_080--Hb_000012_340 Hb_001123_080--Hb_000201_060 Hb_001123_080--Hb_000754_010 Hb_014881_020--Hb_000201_060 Hb_014881_020--Hb_000816_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0102291 0.620428 0.332213 11.7161 0.00957637 0.0197389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0365901 0 0.0364024 0.811295

CAGE analysis