Hb_000358_070

Information

Type -
Description -
Location Contig358: 95479-96327
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01410g
description POPTRDRAFT_1073283; hypothetical protein
nr
ID XP_002303158.2
description hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
swissprot
ID Q86JM5
description Putative elongation of fatty acids protein DDB_G0272012 OS=Dictyostelium discoideum GN=DDB_G0272012 PE=3 SV=1
trembl
ID B9GZG1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01410g PE=4 SV=2
Gene Ontology
ID GO:0016021
description elongation of fatty acids protein ddb_g0272012

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36887: 95226-96075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_070 0.0 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
2 Hb_000816_170 0.0515634111 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
3 Hb_029508_050 0.059231724 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
4 Hb_000201_060 0.0667231893 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
5 Hb_003607_040 0.0713160621 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_003090_250 0.0801463243 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
7 Hb_006061_020 0.0827804884 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
8 Hb_001232_170 0.0882288336 - - sulfate transporter, putative [Ricinus communis]
9 Hb_014881_020 0.090655207 - - Protein P21, putative [Ricinus communis]
10 Hb_001343_060 0.0946854246 - - Cytochrome P450 [Theobroma cacao]
11 Hb_000754_010 0.094983306 - - unnamed protein product [Vitis vinifera]
12 Hb_000012_340 0.0958200795 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
13 Hb_116679_010 0.098299377 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
14 Hb_001123_080 0.0983861219 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006018_020 0.0989180078 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000243_240 0.0990311558 - - cytochrome P450 family protein [Populus trichocarpa]
17 Hb_006452_080 0.1001228139 - - Nodulin, putative [Ricinus communis]
18 Hb_159791_010 0.1015630954 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
19 Hb_011344_110 0.1017719193 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
20 Hb_007472_060 0.1027098464 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_070 Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_000358_070--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_000358_070--Hb_029508_050 Hb_000201_060 Hb_000201_060 Hb_000358_070--Hb_000201_060 Hb_003607_040 Hb_003607_040 Hb_000358_070--Hb_003607_040 Hb_003090_250 Hb_003090_250 Hb_000358_070--Hb_003090_250 Hb_006061_020 Hb_006061_020 Hb_000358_070--Hb_006061_020 Hb_000012_340 Hb_000012_340 Hb_000816_170--Hb_000012_340 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_001343_060 Hb_001343_060 Hb_000816_170--Hb_001343_060 Hb_000816_170--Hb_000201_060 Hb_029508_050--Hb_000201_060 Hb_029508_050--Hb_003607_040 Hb_006452_080 Hb_006452_080 Hb_029508_050--Hb_006452_080 Hb_029508_050--Hb_003090_250 Hb_007472_060 Hb_007472_060 Hb_029508_050--Hb_007472_060 Hb_000201_060--Hb_003090_250 Hb_000754_010 Hb_000754_010 Hb_000201_060--Hb_000754_010 Hb_000201_060--Hb_006061_020 Hb_000201_060--Hb_006452_080 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_003607_040--Hb_000012_340 Hb_003607_040--Hb_000816_170 Hb_003090_250--Hb_006452_080 Hb_003090_250--Hb_000754_010 Hb_003090_250--Hb_006061_020 Hb_006061_020--Hb_000754_010 Hb_004807_070 Hb_004807_070 Hb_006061_020--Hb_004807_070 Hb_006018_020 Hb_006018_020 Hb_006061_020--Hb_006018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.89033 0.481723 63.7987 0 0.0319753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0490797 0 0.495666 2.87338

CAGE analysis