Hb_007472_060

Information

Type -
Description -
Location Contig7472: 159386-162523
Sequence    

Annotation

kegg
ID rcu:RCOM_0867870
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012072650.1
description PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
swissprot
ID Q9C6W5
description ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1
trembl
ID A0A067KZZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06712 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56697: 159207-159814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007472_060 0.0 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
2 Hb_000527_090 0.0797293573 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_011689_090 0.080838713 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
4 Hb_029508_050 0.0810426984 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
5 Hb_116679_010 0.0840743506 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
6 Hb_006452_080 0.0888765882 - - Nodulin, putative [Ricinus communis]
7 Hb_003607_040 0.0923452501 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_002820_100 0.0983381757 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
9 Hb_000086_160 0.0987897929 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
10 Hb_137821_010 0.0988140923 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
11 Hb_006275_080 0.1004186654 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
12 Hb_000358_070 0.1027098464 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
13 Hb_007441_320 0.1042601258 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
14 Hb_001104_290 0.1062081158 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
15 Hb_005463_120 0.1084939843 - - gibberellin 20-oxidase, putative [Ricinus communis]
16 Hb_000363_100 0.109532742 - - -
17 Hb_000027_010 0.1103931039 - - -
18 Hb_001804_020 0.1120420765 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
19 Hb_000048_120 0.112321904 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
20 Hb_125152_010 0.1123497513 - - Ankyrin repeat family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_007472_060 Hb_007472_060 Hb_000527_090 Hb_000527_090 Hb_007472_060--Hb_000527_090 Hb_011689_090 Hb_011689_090 Hb_007472_060--Hb_011689_090 Hb_029508_050 Hb_029508_050 Hb_007472_060--Hb_029508_050 Hb_116679_010 Hb_116679_010 Hb_007472_060--Hb_116679_010 Hb_006452_080 Hb_006452_080 Hb_007472_060--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_007472_060--Hb_003607_040 Hb_000527_090--Hb_006452_080 Hb_137821_010 Hb_137821_010 Hb_000527_090--Hb_137821_010 Hb_003747_080 Hb_003747_080 Hb_000527_090--Hb_003747_080 Hb_007441_320 Hb_007441_320 Hb_000527_090--Hb_007441_320 Hb_000048_120 Hb_000048_120 Hb_000527_090--Hb_000048_120 Hb_011689_090--Hb_116679_010 Hb_006275_080 Hb_006275_080 Hb_011689_090--Hb_006275_080 Hb_170597_010 Hb_170597_010 Hb_011689_090--Hb_170597_010 Hb_011689_090--Hb_006452_080 Hb_011689_090--Hb_003607_040 Hb_000027_010 Hb_000027_010 Hb_011689_090--Hb_000027_010 Hb_000358_070 Hb_000358_070 Hb_029508_050--Hb_000358_070 Hb_000201_060 Hb_000201_060 Hb_029508_050--Hb_000201_060 Hb_029508_050--Hb_003607_040 Hb_029508_050--Hb_006452_080 Hb_003090_250 Hb_003090_250 Hb_029508_050--Hb_003090_250 Hb_116679_010--Hb_170597_010 Hb_116679_010--Hb_006275_080 Hb_116679_010--Hb_003607_040 Hb_116679_010--Hb_006452_080 Hb_116679_010--Hb_000027_010 Hb_006452_080--Hb_003090_250 Hb_006452_080--Hb_170597_010 Hb_006452_080--Hb_000201_060 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.31978 0.0242648 4.31088 0.00984496 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0449257 0.0396917

CAGE analysis