Hb_006018_020

Information

Type -
Description -
Location Contig6018: 71833-73789
Sequence    

Annotation

kegg
ID rcu:RCOM_0174600
description hypothetical protein
nr
ID XP_002527485.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNB6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50592: 72903-73173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006018_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001123_080 0.0492577457 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000754_010 0.050058932 - - unnamed protein product [Vitis vinifera]
4 Hb_001232_170 0.0600635721 - - sulfate transporter, putative [Ricinus communis]
5 Hb_014881_020 0.0622949798 - - Protein P21, putative [Ricinus communis]
6 Hb_000628_070 0.0645532316 - - -
7 Hb_011344_110 0.0707833377 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
8 Hb_004807_070 0.0741674292 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
9 Hb_000201_060 0.0743187973 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
10 Hb_006061_020 0.0774274643 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
11 Hb_000816_170 0.0848477437 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
12 Hb_000244_290 0.0892125907 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
13 Hb_001269_430 0.0919215487 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
14 Hb_003090_250 0.0925654813 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
15 Hb_001343_060 0.0984237122 - - Cytochrome P450 [Theobroma cacao]
16 Hb_000358_070 0.0989180078 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
17 Hb_159791_010 0.099200814 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
18 Hb_000012_340 0.1000909772 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
19 Hb_000087_160 0.1019817177 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001141_430 0.1027895759 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]

Gene co-expression network

sample Hb_006018_020 Hb_006018_020 Hb_001123_080 Hb_001123_080 Hb_006018_020--Hb_001123_080 Hb_000754_010 Hb_000754_010 Hb_006018_020--Hb_000754_010 Hb_001232_170 Hb_001232_170 Hb_006018_020--Hb_001232_170 Hb_014881_020 Hb_014881_020 Hb_006018_020--Hb_014881_020 Hb_000628_070 Hb_000628_070 Hb_006018_020--Hb_000628_070 Hb_011344_110 Hb_011344_110 Hb_006018_020--Hb_011344_110 Hb_001123_080--Hb_014881_020 Hb_001123_080--Hb_001232_170 Hb_000012_340 Hb_000012_340 Hb_001123_080--Hb_000012_340 Hb_000201_060 Hb_000201_060 Hb_001123_080--Hb_000201_060 Hb_001123_080--Hb_000754_010 Hb_006061_020 Hb_006061_020 Hb_000754_010--Hb_006061_020 Hb_003090_250 Hb_003090_250 Hb_000754_010--Hb_003090_250 Hb_000754_010--Hb_000201_060 Hb_004807_070 Hb_004807_070 Hb_000754_010--Hb_004807_070 Hb_001232_170--Hb_000628_070 Hb_000816_170 Hb_000816_170 Hb_001232_170--Hb_000816_170 Hb_001232_170--Hb_011344_110 Hb_001232_170--Hb_014881_020 Hb_014881_020--Hb_011344_110 Hb_014881_020--Hb_000201_060 Hb_014881_020--Hb_000816_170 Hb_000244_290 Hb_000244_290 Hb_000628_070--Hb_000244_290 Hb_000628_070--Hb_011344_110 Hb_001712_010 Hb_001712_010 Hb_000628_070--Hb_001712_010 Hb_005396_020 Hb_005396_020 Hb_000628_070--Hb_005396_020 Hb_011344_110--Hb_000244_290 Hb_001343_060 Hb_001343_060 Hb_011344_110--Hb_001343_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323651 7.50327 2.91289 137.348 0.254069 0.484171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.99269

CAGE analysis