Hb_000628_070

Information

Type -
Description -
Location Contig628: 102063-102347
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005622
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51755: 101872-102410
cDNA
(Sanger)
(ID:Location)		 005_M02.ab1: 101874-102408 , 025_L14.ab1: 101902-102410

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000628_070 0.0 - - -
2 Hb_001232_170 0.0572373919 - - sulfate transporter, putative [Ricinus communis]
3 Hb_000244_290 0.0573922545 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
4 Hb_011344_110 0.0637521082 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
5 Hb_006018_020 0.0645532316 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001712_010 0.0674328925 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
7 Hb_005396_020 0.0711292941 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
8 Hb_000816_090 0.0782726391 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
9 Hb_001123_080 0.0806912048 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001141_430 0.0817023851 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
11 Hb_001157_120 0.0857453853 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
12 Hb_014881_020 0.0857860118 - - Protein P21, putative [Ricinus communis]
13 Hb_001343_060 0.086590943 - - Cytochrome P450 [Theobroma cacao]
14 Hb_000521_060 0.087440498 - - PREDICTED: protein YLS3-like [Jatropha curcas]
15 Hb_004807_070 0.0887013189 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
16 Hb_000816_170 0.0893317345 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
17 Hb_159791_010 0.0899830614 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
18 Hb_006816_060 0.0918671253 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
19 Hb_000087_160 0.0930295694 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_006570_170 0.0945515464 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000628_070 Hb_000628_070 Hb_001232_170 Hb_001232_170 Hb_000628_070--Hb_001232_170 Hb_000244_290 Hb_000244_290 Hb_000628_070--Hb_000244_290 Hb_011344_110 Hb_011344_110 Hb_000628_070--Hb_011344_110 Hb_006018_020 Hb_006018_020 Hb_000628_070--Hb_006018_020 Hb_001712_010 Hb_001712_010 Hb_000628_070--Hb_001712_010 Hb_005396_020 Hb_005396_020 Hb_000628_070--Hb_005396_020 Hb_001232_170--Hb_006018_020 Hb_000816_170 Hb_000816_170 Hb_001232_170--Hb_000816_170 Hb_001232_170--Hb_011344_110 Hb_001123_080 Hb_001123_080 Hb_001232_170--Hb_001123_080 Hb_014881_020 Hb_014881_020 Hb_001232_170--Hb_014881_020 Hb_000244_290--Hb_011344_110 Hb_000243_240 Hb_000243_240 Hb_000244_290--Hb_000243_240 Hb_000327_350 Hb_000327_350 Hb_000244_290--Hb_000327_350 Hb_000816_090 Hb_000816_090 Hb_000244_290--Hb_000816_090 Hb_001157_120 Hb_001157_120 Hb_000244_290--Hb_001157_120 Hb_001343_060 Hb_001343_060 Hb_011344_110--Hb_001343_060 Hb_011344_110--Hb_014881_020 Hb_011344_110--Hb_006018_020 Hb_006018_020--Hb_001123_080 Hb_000754_010 Hb_000754_010 Hb_006018_020--Hb_000754_010 Hb_006018_020--Hb_014881_020 Hb_092272_010 Hb_092272_010 Hb_001712_010--Hb_092272_010 Hb_001712_010--Hb_001343_060 Hb_001141_430 Hb_001141_430 Hb_001712_010--Hb_001141_430 Hb_001712_010--Hb_011344_110 Hb_004757_010 Hb_004757_010 Hb_001712_010--Hb_004757_010 Hb_001634_050 Hb_001634_050 Hb_005396_020--Hb_001634_050 Hb_005396_020--Hb_000816_090 Hb_012180_070 Hb_012180_070 Hb_005396_020--Hb_012180_070 Hb_003060_020 Hb_003060_020 Hb_005396_020--Hb_003060_020 Hb_006570_170 Hb_006570_170 Hb_005396_020--Hb_006570_170 Hb_003528_090 Hb_003528_090 Hb_005396_020--Hb_003528_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238766 13.975 9.94088 284.107 0.228702 1.66505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.812884 26.2868

CAGE analysis