Hb_001269_430

Information

Type -
Description -
Location Contig1269: 470117-473594
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12840g
description POPTRDRAFT_754979; hypothetical protein
nr
ID KDP38361.1
description hypothetical protein JCGZ_04286 [Jatropha curcas]
swissprot
ID Q9SRE7
description Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1
trembl
ID A0A067KQ75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04286 PE=4 SV=1
Gene Ontology
ID GO:0046872
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08213: 473051-473881
cDNA
(Sanger)
(ID:Location)		 034_K06.ab1: 473051-473794 , 034_O06.ab1: 473051-473818 , 036_J13.ab1: 473051-473808 , 042_K06.ab1: 473051-473818 , 051_I11.ab1: 473051-473818 , 053_B02.ab1: 473051-473656

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_430 0.0 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
2 Hb_001343_060 0.0640897602 - - Cytochrome P450 [Theobroma cacao]
3 Hb_004807_070 0.067893003 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
4 Hb_001401_110 0.0690513545 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
5 Hb_000438_180 0.0743119776 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_011930_090 0.0777681437 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
7 Hb_011344_110 0.0803290053 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
8 Hb_001712_010 0.0826017829 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
9 Hb_001141_430 0.0838068079 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
10 Hb_006061_020 0.0886406775 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
11 Hb_000754_010 0.0889729962 - - unnamed protein product [Vitis vinifera]
12 Hb_004757_010 0.0915496866 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
13 Hb_159791_010 0.0919092431 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
14 Hb_006018_020 0.0919215487 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008406_170 0.0930181589 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001232_170 0.0932903604 - - sulfate transporter, putative [Ricinus communis]
17 Hb_000025_150 0.094370056 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
18 Hb_000628_070 0.0959342371 - - -
19 Hb_012217_010 0.0963567393 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
20 Hb_019299_010 0.0984936396 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_430 Hb_001269_430 Hb_001343_060 Hb_001343_060 Hb_001269_430--Hb_001343_060 Hb_004807_070 Hb_004807_070 Hb_001269_430--Hb_004807_070 Hb_001401_110 Hb_001401_110 Hb_001269_430--Hb_001401_110 Hb_000438_180 Hb_000438_180 Hb_001269_430--Hb_000438_180 Hb_011930_090 Hb_011930_090 Hb_001269_430--Hb_011930_090 Hb_011344_110 Hb_011344_110 Hb_001269_430--Hb_011344_110 Hb_001141_430 Hb_001141_430 Hb_001343_060--Hb_001141_430 Hb_159791_010 Hb_159791_010 Hb_001343_060--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_001343_060--Hb_004757_010 Hb_001343_060--Hb_011344_110 Hb_000816_170 Hb_000816_170 Hb_001343_060--Hb_000816_170 Hb_004807_070--Hb_001401_110 Hb_000201_060 Hb_000201_060 Hb_004807_070--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_004807_070--Hb_000754_010 Hb_006018_020 Hb_006018_020 Hb_004807_070--Hb_006018_020 Hb_004807_070--Hb_001343_060 Hb_001401_110--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_001401_110--Hb_187906_010 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010 Hb_000438_180--Hb_187906_010 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010 Hb_019299_010 Hb_019299_010 Hb_011930_090--Hb_019299_010 Hb_012217_010 Hb_012217_010 Hb_011930_090--Hb_012217_010 Hb_000087_160 Hb_000087_160 Hb_011930_090--Hb_000087_160 Hb_009851_120 Hb_009851_120 Hb_011930_090--Hb_009851_120 Hb_011930_090--Hb_000438_180 Hb_000244_290 Hb_000244_290 Hb_011344_110--Hb_000244_290 Hb_000628_070 Hb_000628_070 Hb_011344_110--Hb_000628_070 Hb_014881_020 Hb_014881_020 Hb_011344_110--Hb_014881_020 Hb_001232_170 Hb_001232_170 Hb_011344_110--Hb_001232_170 Hb_011344_110--Hb_006018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.962719 160.998 28.6399 1463.88 2.17035 2.50472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.531242 0.167122 0 3.31308 142.172

CAGE analysis