Hb_000633_030

Information

Type -
Description -
Location Contig633: 56623-59301
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21020g
description POPTRDRAFT_749226; hypothetical protein
nr
ID XP_002303994.2
description hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
swissprot
ID Q9LVC0
description Arabinogalactan peptide 14 OS=Arabidopsis thaliana GN=AGP14 PE=1 SV=1
trembl
ID B9GY63
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s21020g PE=4 SV=2
Gene Ontology
ID GO:0005886
description arabinogalactan peptide 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51865: 58572-59417
cDNA
(Sanger)
(ID:Location)		 006_M20.ab1: 58685-59419 , 009_I10.ab1: 58781-59417 , 012_C03.ab1: 58786-59417 , 013_I14.ab1: 58855-59417 , 015_P11.ab1: 58773-59420 , 017_L02.ab1: 58754-59419 , 023_J22.ab1: 58756-59419 , 031_K21.ab1: 58789-59416 , 032_J17.ab1: 58914-59415 , 035_C18.ab1: 58688-59419 , 038_L05.ab1: 58632-59415 , 039_B22.ab1: 58954-59417 , 043_C07.ab1: 58827-59413 , 043_M24.ab1: 58693-59415 , 045_A14.ab1: 58673-59415 , 047_E01.ab1: 58734-59413 , 048_K17.ab1: 58687-59415 , 049_C22.ab1: 58896-59394 , 050_C04.ab1: 58785-59415 , 050_G07.ab1: 58797-59413 , 052_F23.ab1: 58713-59417 , 052_P03.ab1: 58771-59415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000633_030 0.0 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
2 Hb_000413_030 0.0881575234 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
3 Hb_001269_160 0.0975076669 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005056_040 0.101097043 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
5 Hb_001456_030 0.1025720249 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
6 Hb_031579_010 0.1033206307 - - JHL22C18.10 [Jatropha curcas]
7 Hb_064047_020 0.104229985 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
8 Hb_000414_090 0.1043394915 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000037_150 0.1059650933 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
10 Hb_000462_120 0.1119849018 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
11 Hb_000964_080 0.1123402437 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
12 Hb_005616_020 0.1130714076 - - kinase, putative [Ricinus communis]
13 Hb_003376_060 0.1135936408 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
14 Hb_000173_140 0.1136683053 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
15 Hb_050160_010 0.1158791846 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
16 Hb_001500_090 0.1160329003 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011912_010 0.1171055724 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_009476_080 0.1174092767 - - BnaA03g18920D [Brassica napus]
19 Hb_000729_040 0.1190938308 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
20 Hb_000620_050 0.1212892117 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]

Gene co-expression network

sample Hb_000633_030 Hb_000633_030 Hb_000413_030 Hb_000413_030 Hb_000633_030--Hb_000413_030 Hb_001269_160 Hb_001269_160 Hb_000633_030--Hb_001269_160 Hb_005056_040 Hb_005056_040 Hb_000633_030--Hb_005056_040 Hb_001456_030 Hb_001456_030 Hb_000633_030--Hb_001456_030 Hb_031579_010 Hb_031579_010 Hb_000633_030--Hb_031579_010 Hb_064047_020 Hb_064047_020 Hb_000633_030--Hb_064047_020 Hb_011912_010 Hb_011912_010 Hb_000413_030--Hb_011912_010 Hb_000413_030--Hb_064047_020 Hb_000964_080 Hb_000964_080 Hb_000413_030--Hb_000964_080 Hb_003376_060 Hb_003376_060 Hb_000413_030--Hb_003376_060 Hb_000037_150 Hb_000037_150 Hb_000413_030--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_000413_030--Hb_001307_180 Hb_002499_030 Hb_002499_030 Hb_001269_160--Hb_002499_030 Hb_001269_160--Hb_000413_030 Hb_009476_080 Hb_009476_080 Hb_001269_160--Hb_009476_080 Hb_011224_070 Hb_011224_070 Hb_001269_160--Hb_011224_070 Hb_001269_160--Hb_064047_020 Hb_003747_160 Hb_003747_160 Hb_001269_160--Hb_003747_160 Hb_001477_050 Hb_001477_050 Hb_005056_040--Hb_001477_050 Hb_002750_030 Hb_002750_030 Hb_005056_040--Hb_002750_030 Hb_005056_040--Hb_000037_150 Hb_000836_640 Hb_000836_640 Hb_005056_040--Hb_000836_640 Hb_024074_030 Hb_024074_030 Hb_005056_040--Hb_024074_030 Hb_001500_090 Hb_001500_090 Hb_005056_040--Hb_001500_090 Hb_005616_020 Hb_005616_020 Hb_001456_030--Hb_005616_020 Hb_001456_030--Hb_003376_060 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_000462_120 Hb_000462_120 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_001456_030--Hb_000964_080 Hb_000034_060 Hb_000034_060 Hb_031579_010--Hb_000034_060 Hb_010193_020 Hb_010193_020 Hb_031579_010--Hb_010193_020 Hb_000866_400 Hb_000866_400 Hb_031579_010--Hb_000866_400 Hb_011709_010 Hb_011709_010 Hb_031579_010--Hb_011709_010 Hb_000620_050 Hb_000620_050 Hb_031579_010--Hb_000620_050 Hb_064047_020--Hb_011912_010 Hb_002085_060 Hb_002085_060 Hb_064047_020--Hb_002085_060 Hb_064047_020--Hb_002750_030 Hb_003645_040 Hb_003645_040 Hb_064047_020--Hb_003645_040 Hb_070771_010 Hb_070771_010 Hb_064047_020--Hb_070771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.777415 2.45968 22.3745 336.638 0.517896 2.48629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.3386 151.659

CAGE analysis