Hb_001673_090

Information

Type -
Description -
Location Contig1673: 134365-135267
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21590g
description POPTRDRAFT_417738; hypothetical protein
nr
ID XP_002308331.2
description hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID B9H9M0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s21590g PE=4 SV=2
Gene Ontology
ID GO:0009055
description glutaredoxin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15452: 134626-134860 , PASA_asmbl_15453: 136020-140098
cDNA
(Sanger)
(ID:Location)		 009_C02.ab1: 136040-140011 , 049_M22.ab1: 136135-140098

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001673_090 0.0 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
2 Hb_000413_120 0.1222888657 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
3 Hb_025193_010 0.1238500457 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]
4 Hb_009662_040 0.1384895403 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
5 Hb_004933_010 0.1410679661 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
6 Hb_002783_100 0.1455809275 - - Zeamatin precursor, putative [Ricinus communis]
7 Hb_002228_120 0.1489906161 - - potassium channel beta, putative [Ricinus communis]
8 Hb_000317_380 0.1516473169 - - Peroxidase 47 precursor, putative [Ricinus communis]
9 Hb_050898_040 0.1539987964 - - -
10 Hb_000666_040 0.1544103031 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
11 Hb_140627_040 0.1555850171 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
12 Hb_001496_150 0.1572146244 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
13 Hb_004899_230 0.1577412503 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
14 Hb_000005_290 0.1580205698 - - Serine carboxypeptidase, putative [Ricinus communis]
15 Hb_003544_080 0.1585476809 - - Protein HVA22, putative [Ricinus communis]
16 Hb_002276_080 0.1590433317 - - Protein bem46, putative [Ricinus communis]
17 Hb_058471_020 0.1599043615 - - PREDICTED: expansin-B3-like [Jatropha curcas]
18 Hb_017908_010 0.1599998418 - - conserved hypothetical protein [Ricinus communis]
19 Hb_162472_010 0.1627862643 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001568_040 0.1635368104 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001673_090 Hb_001673_090 Hb_000413_120 Hb_000413_120 Hb_001673_090--Hb_000413_120 Hb_025193_010 Hb_025193_010 Hb_001673_090--Hb_025193_010 Hb_009662_040 Hb_009662_040 Hb_001673_090--Hb_009662_040 Hb_004933_010 Hb_004933_010 Hb_001673_090--Hb_004933_010 Hb_002783_100 Hb_002783_100 Hb_001673_090--Hb_002783_100 Hb_002228_120 Hb_002228_120 Hb_001673_090--Hb_002228_120 Hb_000413_120--Hb_002228_120 Hb_000413_120--Hb_004933_010 Hb_015292_020 Hb_015292_020 Hb_000413_120--Hb_015292_020 Hb_140627_040 Hb_140627_040 Hb_000413_120--Hb_140627_040 Hb_000333_140 Hb_000333_140 Hb_000413_120--Hb_000333_140 Hb_009062_020 Hb_009062_020 Hb_000413_120--Hb_009062_020 Hb_002263_050 Hb_002263_050 Hb_025193_010--Hb_002263_050 Hb_025193_010--Hb_009662_040 Hb_025193_010--Hb_004933_010 Hb_000487_130 Hb_000487_130 Hb_025193_010--Hb_000487_130 Hb_000622_230 Hb_000622_230 Hb_025193_010--Hb_000622_230 Hb_000666_040 Hb_000666_040 Hb_009662_040--Hb_000666_040 Hb_002999_020 Hb_002999_020 Hb_009662_040--Hb_002999_020 Hb_153258_030 Hb_153258_030 Hb_009662_040--Hb_153258_030 Hb_016734_110 Hb_016734_110 Hb_009662_040--Hb_016734_110 Hb_001623_560 Hb_001623_560 Hb_009662_040--Hb_001623_560 Hb_000742_040 Hb_000742_040 Hb_009662_040--Hb_000742_040 Hb_001635_140 Hb_001635_140 Hb_004933_010--Hb_001635_140 Hb_011628_010 Hb_011628_010 Hb_004933_010--Hb_011628_010 Hb_004933_010--Hb_002228_120 Hb_004933_010--Hb_000333_140 Hb_004933_010--Hb_015292_020 Hb_000317_380 Hb_000317_380 Hb_002783_100--Hb_000317_380 Hb_000005_290 Hb_000005_290 Hb_002783_100--Hb_000005_290 Hb_001975_110 Hb_001975_110 Hb_002783_100--Hb_001975_110 Hb_050898_040 Hb_050898_040 Hb_002783_100--Hb_050898_040 Hb_002309_020 Hb_002309_020 Hb_002783_100--Hb_002309_020 Hb_004162_200 Hb_004162_200 Hb_002783_100--Hb_004162_200 Hb_002228_120--Hb_009662_040 Hb_009367_070 Hb_009367_070 Hb_002228_120--Hb_009367_070 Hb_034713_010 Hb_034713_010 Hb_002228_120--Hb_034713_010 Hb_002228_120--Hb_140627_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0502369 0.0209866 1.07108 3.37432 0.02521 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0576395 0 0.0828312 0.0365552 0.552014

CAGE analysis