Hb_000622_190

Information

Type -
Description -
Location Contig622: 165562-166766
Sequence    

Annotation

kegg
ID rcu:RCOM_1617350
description hypothetical protein
nr
ID XP_012083264.1
description PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14298 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51568: 165577-166133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_190 0.0 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
2 Hb_102772_010 0.1038949807 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000608_090 0.1166742253 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007311_050 0.1193016022 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004586_440 0.1236158256 - - Blue copper protein precursor, putative [Ricinus communis]
6 Hb_000622_120 0.1272177647 - - hypothetical protein [Hevea brasiliensis]
7 Hb_000362_030 0.1335451091 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
8 Hb_000086_460 0.1351911698 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
9 Hb_001369_480 0.1373116884 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
10 Hb_000482_080 0.1381709379 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
11 Hb_004657_070 0.1408136234 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
12 Hb_000637_100 0.1417874584 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
13 Hb_000115_200 0.141889909 - - PREDICTED: endonuclease 2 [Jatropha curcas]
14 Hb_031330_010 0.1421070465 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
15 Hb_003580_020 0.1470756332 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012114_090 0.1480275477 - - tubulin beta chain, putative [Ricinus communis]
17 Hb_017914_020 0.1484283456 - - -
18 Hb_001269_180 0.1498760057 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_055276_010 0.1516282474 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
20 Hb_000428_040 0.1517105463 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]

Gene co-expression network

sample Hb_000622_190 Hb_000622_190 Hb_102772_010 Hb_102772_010 Hb_000622_190--Hb_102772_010 Hb_000608_090 Hb_000608_090 Hb_000622_190--Hb_000608_090 Hb_007311_050 Hb_007311_050 Hb_000622_190--Hb_007311_050 Hb_004586_440 Hb_004586_440 Hb_000622_190--Hb_004586_440 Hb_000622_120 Hb_000622_120 Hb_000622_190--Hb_000622_120 Hb_000362_030 Hb_000362_030 Hb_000622_190--Hb_000362_030 Hb_102772_010--Hb_000622_120 Hb_000995_020 Hb_000995_020 Hb_102772_010--Hb_000995_020 Hb_000622_230 Hb_000622_230 Hb_102772_010--Hb_000622_230 Hb_000115_200 Hb_000115_200 Hb_102772_010--Hb_000115_200 Hb_001433_230 Hb_001433_230 Hb_102772_010--Hb_001433_230 Hb_005616_020 Hb_005616_020 Hb_000608_090--Hb_005616_020 Hb_031330_010 Hb_031330_010 Hb_000608_090--Hb_031330_010 Hb_000608_090--Hb_004586_440 Hb_001158_170 Hb_001158_170 Hb_000608_090--Hb_001158_170 Hb_003376_060 Hb_003376_060 Hb_000608_090--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_000608_090--Hb_001456_030 Hb_000054_010 Hb_000054_010 Hb_007311_050--Hb_000054_010 Hb_000482_080 Hb_000482_080 Hb_007311_050--Hb_000482_080 Hb_007311_050--Hb_102772_010 Hb_003020_200 Hb_003020_200 Hb_007311_050--Hb_003020_200 Hb_000637_100 Hb_000637_100 Hb_007311_050--Hb_000637_100 Hb_001369_480 Hb_001369_480 Hb_004586_440--Hb_001369_480 Hb_004586_440--Hb_000362_030 Hb_071079_040 Hb_071079_040 Hb_004586_440--Hb_071079_040 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070 Hb_000622_120--Hb_000622_230 Hb_000622_120--Hb_000115_200 Hb_007574_040 Hb_007574_040 Hb_000622_120--Hb_007574_040 Hb_177208_010 Hb_177208_010 Hb_000622_120--Hb_177208_010 Hb_000362_030--Hb_031330_010 Hb_000362_030--Hb_001369_480 Hb_000362_030--Hb_000608_090 Hb_000645_230 Hb_000645_230 Hb_000362_030--Hb_000645_230 Hb_000362_030--Hb_000482_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.255411 0.326318 1.86748 20.6086 0.0222793 0.0491207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152599 0.440066 0.368109 0.112626 5.48226

CAGE analysis