Hb_003020_200

Information

Type -
Description -
Location Contig3020: 128602-128877
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04230g
description hypothetical protein
nr
ID XP_011032226.1
description PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PDE4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04230g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_200 0.0 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
2 Hb_011169_010 0.1231337867 - - mta/sah nucleosidase, putative [Ricinus communis]
3 Hb_000617_300 0.1423916026 - - RALFL33, putative [Ricinus communis]
4 Hb_004657_070 0.1490312036 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
5 Hb_007311_050 0.1598270184 - - conserved hypothetical protein [Ricinus communis]
6 Hb_102772_010 0.1609249141 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000622_190 0.1657239358 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
8 Hb_000193_130 0.1663342973 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000482_080 0.1709540947 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
10 Hb_017914_020 0.1736117571 - - -
11 Hb_057343_010 0.1763093608 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
12 Hb_001758_090 0.1780733633 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
13 Hb_000362_030 0.1797548372 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
14 Hb_003765_010 0.1824015997 - - berberine bridge enzyme [Hevea brasiliensis]
15 Hb_009486_030 0.1847300291 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
16 Hb_000622_120 0.1861801078 - - hypothetical protein [Hevea brasiliensis]
17 Hb_012565_010 0.1908737345 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
18 Hb_000428_040 0.1920468843 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
19 Hb_005357_170 0.1927564461 - - Pectinesterase precursor, putative [Ricinus communis]
20 Hb_000054_010 0.1944922013 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_200 Hb_003020_200 Hb_011169_010 Hb_011169_010 Hb_003020_200--Hb_011169_010 Hb_000617_300 Hb_000617_300 Hb_003020_200--Hb_000617_300 Hb_004657_070 Hb_004657_070 Hb_003020_200--Hb_004657_070 Hb_007311_050 Hb_007311_050 Hb_003020_200--Hb_007311_050 Hb_102772_010 Hb_102772_010 Hb_003020_200--Hb_102772_010 Hb_000622_190 Hb_000622_190 Hb_003020_200--Hb_000622_190 Hb_003765_010 Hb_003765_010 Hb_011169_010--Hb_003765_010 Hb_000107_240 Hb_000107_240 Hb_011169_010--Hb_000107_240 Hb_000868_020 Hb_000868_020 Hb_011169_010--Hb_000868_020 Hb_000087_010 Hb_000087_010 Hb_011169_010--Hb_000087_010 Hb_103468_010 Hb_103468_010 Hb_011169_010--Hb_103468_010 Hb_003411_120 Hb_003411_120 Hb_000617_300--Hb_003411_120 Hb_001758_090 Hb_001758_090 Hb_000617_300--Hb_001758_090 Hb_003371_030 Hb_003371_030 Hb_000617_300--Hb_003371_030 Hb_019053_050 Hb_019053_050 Hb_000617_300--Hb_019053_050 Hb_000995_020 Hb_000995_020 Hb_000617_300--Hb_000995_020 Hb_000428_040 Hb_000428_040 Hb_004657_070--Hb_000428_040 Hb_000482_080 Hb_000482_080 Hb_004657_070--Hb_000482_080 Hb_000193_130 Hb_000193_130 Hb_004657_070--Hb_000193_130 Hb_000608_090 Hb_000608_090 Hb_004657_070--Hb_000608_090 Hb_031330_010 Hb_031330_010 Hb_004657_070--Hb_031330_010 Hb_004586_440 Hb_004586_440 Hb_004657_070--Hb_004586_440 Hb_007311_050--Hb_000622_190 Hb_000054_010 Hb_000054_010 Hb_007311_050--Hb_000054_010 Hb_007311_050--Hb_000482_080 Hb_007311_050--Hb_102772_010 Hb_000637_100 Hb_000637_100 Hb_007311_050--Hb_000637_100 Hb_000622_120 Hb_000622_120 Hb_102772_010--Hb_000622_120 Hb_102772_010--Hb_000622_190 Hb_102772_010--Hb_000995_020 Hb_000622_230 Hb_000622_230 Hb_102772_010--Hb_000622_230 Hb_000115_200 Hb_000115_200 Hb_102772_010--Hb_000115_200 Hb_001433_230 Hb_001433_230 Hb_102772_010--Hb_001433_230 Hb_000622_190--Hb_000608_090 Hb_000622_190--Hb_004586_440 Hb_000622_190--Hb_000622_120 Hb_000362_030 Hb_000362_030 Hb_000622_190--Hb_000362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40425 3.93978 19.3197 811.282 4.27434 8.60396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8743 11.427 10.5019 11.0092 127.464

CAGE analysis