Hb_000087_010

Information

Type -
Description -
Location Contig87: 19775-21874
Sequence    

Annotation

kegg
ID rcu:RCOM_1326370
description mta/sah nucleosidase, putative
nr
ID XP_002520044.1
description mta/sah nucleosidase, putative [Ricinus communis]
swissprot
ID Q07469
description Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1
trembl
ID B9S225
description Mta/sah nucleosidase, putative OS=Ricinus communis GN=RCOM_1326370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61124: 19816-21951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_010 0.0 - - mta/sah nucleosidase, putative [Ricinus communis]
2 Hb_004884_050 0.1184801946 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
3 Hb_001741_110 0.1193581056 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
4 Hb_011169_010 0.129663196 - - mta/sah nucleosidase, putative [Ricinus communis]
5 Hb_000115_210 0.1379859226 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
6 Hb_002374_540 0.1417764372 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
7 Hb_006889_010 0.1515461888 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
8 Hb_005539_330 0.1540240051 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
9 Hb_085158_010 0.1549352458 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
10 Hb_005015_090 0.156367432 - - PREDICTED: cytochrome P450 78A7 [Jatropha curcas]
11 Hb_000107_240 0.15670168 - - organic anion transporter, putative [Ricinus communis]
12 Hb_004162_150 0.1567632441 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
13 Hb_015183_090 0.1570450338 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
14 Hb_001634_050 0.1574041196 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
15 Hb_000431_050 0.1574086959 - - conserved hypothetical protein [Ricinus communis]
16 Hb_017524_020 0.1582245929 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
17 Hb_002701_200 0.1613611101 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
18 Hb_001386_070 0.1614391514 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
19 Hb_000429_070 0.1641371699 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
20 Hb_000012_340 0.164489407 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000087_010 Hb_000087_010 Hb_004884_050 Hb_004884_050 Hb_000087_010--Hb_004884_050 Hb_001741_110 Hb_001741_110 Hb_000087_010--Hb_001741_110 Hb_011169_010 Hb_011169_010 Hb_000087_010--Hb_011169_010 Hb_000115_210 Hb_000115_210 Hb_000087_010--Hb_000115_210 Hb_002374_540 Hb_002374_540 Hb_000087_010--Hb_002374_540 Hb_006889_010 Hb_006889_010 Hb_000087_010--Hb_006889_010 Hb_001123_080 Hb_001123_080 Hb_004884_050--Hb_001123_080 Hb_006970_180 Hb_006970_180 Hb_004884_050--Hb_006970_180 Hb_006618_060 Hb_006618_060 Hb_004884_050--Hb_006618_060 Hb_004884_050--Hb_006889_010 Hb_151436_010 Hb_151436_010 Hb_004884_050--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_004884_050--Hb_085158_010 Hb_001741_110--Hb_002374_540 Hb_146255_010 Hb_146255_010 Hb_001741_110--Hb_146255_010 Hb_001741_110--Hb_011169_010 Hb_001741_110--Hb_004884_050 Hb_000313_080 Hb_000313_080 Hb_001741_110--Hb_000313_080 Hb_003765_010 Hb_003765_010 Hb_011169_010--Hb_003765_010 Hb_000107_240 Hb_000107_240 Hb_011169_010--Hb_000107_240 Hb_003020_200 Hb_003020_200 Hb_011169_010--Hb_003020_200 Hb_000868_020 Hb_000868_020 Hb_011169_010--Hb_000868_020 Hb_103468_010 Hb_103468_010 Hb_011169_010--Hb_103468_010 Hb_004162_150 Hb_004162_150 Hb_000115_210--Hb_004162_150 Hb_000307_160 Hb_000307_160 Hb_000115_210--Hb_000307_160 Hb_005015_090 Hb_005015_090 Hb_000115_210--Hb_005015_090 Hb_015183_090 Hb_015183_090 Hb_000115_210--Hb_015183_090 Hb_000331_380 Hb_000331_380 Hb_000115_210--Hb_000331_380 Hb_000431_050 Hb_000431_050 Hb_000115_210--Hb_000431_050 Hb_002374_540--Hb_146255_010 Hb_002374_540--Hb_000313_080 Hb_001396_270 Hb_001396_270 Hb_002374_540--Hb_001396_270 Hb_005357_170 Hb_005357_170 Hb_002374_540--Hb_005357_170 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_005539_330 Hb_005539_330 Hb_006889_010--Hb_005539_330 Hb_006889_010--Hb_151436_010 Hb_006889_010--Hb_085158_010 Hb_006603_010 Hb_006603_010 Hb_006889_010--Hb_006603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0456 2.13637 16.581 477.793 0 0.618867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.32664 0.517492 1.02585 0.656322 19.3016

CAGE analysis