Hb_004884_050

Information

Type -
Description -
Location Contig4884: 43633-43971
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10380g
description POPTRDRAFT_560938; hypothetical protein
nr
ID XP_012089800.1
description PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_050 0.0 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
2 Hb_001123_080 0.0883325587 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006970_180 0.0952771471 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
4 Hb_006618_060 0.0979152456 - - PREDICTED: 21 kDa protein [Jatropha curcas]
5 Hb_006889_010 0.0990062031 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
6 Hb_151436_010 0.0994293815 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
7 Hb_085158_010 0.100427838 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
8 Hb_002232_340 0.102486871 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
9 Hb_006846_050 0.1042823088 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_001634_050 0.1047962915 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
11 Hb_006603_010 0.1048550911 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
12 Hb_005396_020 0.1062121039 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
13 Hb_006816_060 0.1063879436 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
14 Hb_006570_170 0.1066904499 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
15 Hb_000012_340 0.1083026209 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
16 Hb_001232_170 0.1087895127 - - sulfate transporter, putative [Ricinus communis]
17 Hb_022250_140 0.1096807996 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_006018_020 0.1107094559 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000431_050 0.1137396942 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005539_330 0.1156013907 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]

Gene co-expression network

sample Hb_004884_050 Hb_004884_050 Hb_001123_080 Hb_001123_080 Hb_004884_050--Hb_001123_080 Hb_006970_180 Hb_006970_180 Hb_004884_050--Hb_006970_180 Hb_006618_060 Hb_006618_060 Hb_004884_050--Hb_006618_060 Hb_006889_010 Hb_006889_010 Hb_004884_050--Hb_006889_010 Hb_151436_010 Hb_151436_010 Hb_004884_050--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_004884_050--Hb_085158_010 Hb_006018_020 Hb_006018_020 Hb_001123_080--Hb_006018_020 Hb_014881_020 Hb_014881_020 Hb_001123_080--Hb_014881_020 Hb_001232_170 Hb_001232_170 Hb_001123_080--Hb_001232_170 Hb_000012_340 Hb_000012_340 Hb_001123_080--Hb_000012_340 Hb_000201_060 Hb_000201_060 Hb_001123_080--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_001123_080--Hb_000754_010 Hb_006970_180--Hb_151436_010 Hb_022250_140 Hb_022250_140 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_085158_010 Hb_000431_050 Hb_000431_050 Hb_006970_180--Hb_000431_050 Hb_006603_010 Hb_006603_010 Hb_006970_180--Hb_006603_010 Hb_002073_210 Hb_002073_210 Hb_006970_180--Hb_002073_210 Hb_002232_340 Hb_002232_340 Hb_006618_060--Hb_002232_340 Hb_006846_050 Hb_006846_050 Hb_006618_060--Hb_006846_050 Hb_006618_060--Hb_006603_010 Hb_000628_080 Hb_000628_080 Hb_006618_060--Hb_000628_080 Hb_170597_010 Hb_170597_010 Hb_006618_060--Hb_170597_010 Hb_006618_060--Hb_085158_010 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_005539_330 Hb_005539_330 Hb_006889_010--Hb_005539_330 Hb_006889_010--Hb_151436_010 Hb_006889_010--Hb_085158_010 Hb_006889_010--Hb_006603_010 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_002073_210 Hb_151436_010--Hb_022250_140 Hb_151436_010--Hb_006603_010 Hb_085158_010--Hb_000431_050 Hb_085158_010--Hb_006846_050 Hb_085158_010--Hb_006603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.902306 3.81174 7.39252 154.55 0 0.436284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.840991 0.220376 0 0 7.2527

CAGE analysis