Hb_000313_080

Information

Type rubber biosynthesis
Description Gene Name: CPT3
Location Contig313: 92007-92897
Sequence    

Annotation

kegg
ID pmum:103334495
description dehydrodolichyl diphosphate synthase 6-like
nr
ID AAM92882.1
description cis-prenyltransferase 3 [Hevea brasiliensis]
swissprot
ID Q8W3U4
description Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2 PE=1 SV=1
trembl
ID Q8L3U6
description Cis-prenyl transferase II OS=Hevea brasiliensis GN=Hpt3 PE=2 SV=1
Gene Ontology
ID GO:0050267
description dehydrodolichyl diphosphate synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33133: 91787-93270 , PASA_asmbl_33134: 91594-93133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_080 0.0 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
2 Hb_146255_010 0.0867468367 - - PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]
3 Hb_003685_070 0.0940746639 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
4 Hb_005357_170 0.104829101 - - Pectinesterase precursor, putative [Ricinus communis]
5 Hb_001887_010 0.1073348824 - - mta/sah nucleosidase, putative [Ricinus communis]
6 Hb_006061_030 0.1174908535 - - PREDICTED: fe(2+) transport protein 1-like [Jatropha curcas]
7 Hb_015978_020 0.1241187568 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
8 Hb_002374_540 0.1273129503 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
9 Hb_011224_030 0.1297501799 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
10 Hb_150179_010 0.1331995224 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
11 Hb_055276_010 0.1355790515 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
12 Hb_003765_010 0.1355857253 - - berberine bridge enzyme [Hevea brasiliensis]
13 Hb_029584_030 0.1389606647 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
14 Hb_000664_010 0.1391401333 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
15 Hb_007007_140 0.1404595145 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
16 Hb_001557_030 0.1406938596 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
17 Hb_000392_060 0.1409560355 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
18 Hb_001433_230 0.141342696 - - PREDICTED: kinesin-4-like [Jatropha curcas]
19 Hb_004732_080 0.1421408755 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
20 Hb_002308_040 0.14268069 - - methyladenine glycosylase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000313_080 Hb_000313_080 Hb_146255_010 Hb_146255_010 Hb_000313_080--Hb_146255_010 Hb_003685_070 Hb_003685_070 Hb_000313_080--Hb_003685_070 Hb_005357_170 Hb_005357_170 Hb_000313_080--Hb_005357_170 Hb_001887_010 Hb_001887_010 Hb_000313_080--Hb_001887_010 Hb_006061_030 Hb_006061_030 Hb_000313_080--Hb_006061_030 Hb_015978_020 Hb_015978_020 Hb_000313_080--Hb_015978_020 Hb_002374_540 Hb_002374_540 Hb_146255_010--Hb_002374_540 Hb_146255_010--Hb_001887_010 Hb_000392_060 Hb_000392_060 Hb_146255_010--Hb_000392_060 Hb_146255_010--Hb_003685_070 Hb_146255_010--Hb_006061_030 Hb_003685_070--Hb_001887_010 Hb_150179_010 Hb_150179_010 Hb_003685_070--Hb_150179_010 Hb_011224_030 Hb_011224_030 Hb_003685_070--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_003685_070--Hb_007007_140 Hb_003685_070--Hb_005357_170 Hb_024066_020 Hb_024066_020 Hb_003685_070--Hb_024066_020 Hb_003765_010 Hb_003765_010 Hb_005357_170--Hb_003765_010 Hb_005357_170--Hb_001887_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_001433_230 Hb_001433_230 Hb_005357_170--Hb_001433_230 Hb_005357_170--Hb_011224_030 Hb_001887_010--Hb_150179_010 Hb_001557_030 Hb_001557_030 Hb_001887_010--Hb_001557_030 Hb_001887_010--Hb_003765_010 Hb_002073_210 Hb_002073_210 Hb_001887_010--Hb_002073_210 Hb_005614_060 Hb_005614_060 Hb_006061_030--Hb_005614_060 Hb_000049_190 Hb_000049_190 Hb_006061_030--Hb_000049_190 Hb_005665_100 Hb_005665_100 Hb_006061_030--Hb_005665_100 Hb_004899_230 Hb_004899_230 Hb_006061_030--Hb_004899_230 Hb_001568_040 Hb_001568_040 Hb_006061_030--Hb_001568_040 Hb_003680_240 Hb_003680_240 Hb_015978_020--Hb_003680_240 Hb_015978_020--Hb_003685_070 Hb_014834_100 Hb_014834_100 Hb_015978_020--Hb_014834_100 Hb_140627_040 Hb_140627_040 Hb_015978_020--Hb_140627_040 Hb_015978_020--Hb_001433_230 Hb_015978_020--Hb_005357_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59988 0.141172 8.05588 65.1899 0.167669 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.85289

CAGE analysis