Hb_001396_270

Information

Type -
Description -
Location Contig1396: 194621-197937
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13900g
description POPTRDRAFT_548019; 4-coumarate--CoA ligase family protein
nr
ID XP_002297838.2
description 4-coumarate--CoA ligase family protein [Populus trichocarpa]
swissprot
ID Q9LQ12
description 4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=1 SV=1
trembl
ID B9GMK1
description 4-coumarate--CoA ligase family protein OS=Populus trichocarpa GN=POPTR_0001s13900g PE=4 SV=2
Gene Ontology
ID GO:0005737
description 4-coumarate-- ligase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10772: 196691-197690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_270 0.0 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
2 Hb_006012_030 0.1251977084 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
3 Hb_005914_220 0.145017699 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
4 Hb_003988_020 0.1597239456 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
5 Hb_000042_120 0.1714291497 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
6 Hb_002374_540 0.174989156 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
7 Hb_000270_590 0.1807553673 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
8 Hb_012799_010 0.1822996047 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X2 [Jatropha curcas]
9 Hb_001741_110 0.1860192259 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
10 Hb_000042_350 0.1906678504 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
11 Hb_001246_080 0.1941141168 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
12 Hb_000156_150 0.1951878318 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
13 Hb_001428_010 0.1969585301 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
14 Hb_017524_020 0.1995729384 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
15 Hb_178343_010 0.2001642947 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
16 Hb_001688_090 0.2021999777 - - alcohol dehydrogenase 7 [Vitis vinifera]
17 Hb_001369_680 0.2038133229 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
18 Hb_000905_130 0.205585454 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
19 Hb_000381_140 0.2061909223 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
20 Hb_004218_100 0.2078156293 - - PREDICTED: DNA-directed RNA polymerase V subunit 5C [Jatropha curcas]

Gene co-expression network

sample Hb_001396_270 Hb_001396_270 Hb_006012_030 Hb_006012_030 Hb_001396_270--Hb_006012_030 Hb_005914_220 Hb_005914_220 Hb_001396_270--Hb_005914_220 Hb_003988_020 Hb_003988_020 Hb_001396_270--Hb_003988_020 Hb_000042_120 Hb_000042_120 Hb_001396_270--Hb_000042_120 Hb_002374_540 Hb_002374_540 Hb_001396_270--Hb_002374_540 Hb_000270_590 Hb_000270_590 Hb_001396_270--Hb_000270_590 Hb_012799_010 Hb_012799_010 Hb_006012_030--Hb_012799_010 Hb_000099_110 Hb_000099_110 Hb_006012_030--Hb_000099_110 Hb_012545_020 Hb_012545_020 Hb_006012_030--Hb_012545_020 Hb_001428_010 Hb_001428_010 Hb_006012_030--Hb_001428_010 Hb_000277_040 Hb_000277_040 Hb_006012_030--Hb_000277_040 Hb_005914_220--Hb_000042_120 Hb_000156_150 Hb_000156_150 Hb_005914_220--Hb_000156_150 Hb_005914_220--Hb_006012_030 Hb_000389_130 Hb_000389_130 Hb_005914_220--Hb_000389_130 Hb_005914_220--Hb_001428_010 Hb_000042_350 Hb_000042_350 Hb_003988_020--Hb_000042_350 Hb_002003_100 Hb_002003_100 Hb_003988_020--Hb_002003_100 Hb_000164_210 Hb_000164_210 Hb_003988_020--Hb_000164_210 Hb_034858_010 Hb_034858_010 Hb_003988_020--Hb_034858_010 Hb_003988_020--Hb_000042_120 Hb_001347_020 Hb_001347_020 Hb_000042_120--Hb_001347_020 Hb_000422_100 Hb_000422_100 Hb_000042_120--Hb_000422_100 Hb_111442_010 Hb_111442_010 Hb_000042_120--Hb_111442_010 Hb_130357_010 Hb_130357_010 Hb_000042_120--Hb_130357_010 Hb_003729_040 Hb_003729_040 Hb_000042_120--Hb_003729_040 Hb_000628_090 Hb_000628_090 Hb_000042_120--Hb_000628_090 Hb_146255_010 Hb_146255_010 Hb_002374_540--Hb_146255_010 Hb_001741_110 Hb_001741_110 Hb_002374_540--Hb_001741_110 Hb_000313_080 Hb_000313_080 Hb_002374_540--Hb_000313_080 Hb_000087_010 Hb_000087_010 Hb_002374_540--Hb_000087_010 Hb_005357_170 Hb_005357_170 Hb_002374_540--Hb_005357_170 Hb_000905_130 Hb_000905_130 Hb_000270_590--Hb_000905_130 Hb_003050_210 Hb_003050_210 Hb_000270_590--Hb_003050_210 Hb_002701_200 Hb_002701_200 Hb_000270_590--Hb_002701_200 Hb_000296_030 Hb_000296_030 Hb_000270_590--Hb_000296_030 Hb_000381_140 Hb_000381_140 Hb_000270_590--Hb_000381_140 Hb_017524_020 Hb_017524_020 Hb_000270_590--Hb_017524_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0842153 0.0112306 0.111478 1.27516 0.0105873 0.02094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0161219 0

CAGE analysis