Hb_001428_010

Information

Type -
Description -
Location Contig1428: 21920-23290
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11760g
description POPTRDRAFT_259030; hypothetical protein
nr
ID XP_012083139.1
description PREDICTED: transcription factor PRE1-like [Jatropha curcas]
swissprot
ID Q9LJX1
description Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1
trembl
ID A0A067LM64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09748 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh135

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001428_010 0.0 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
2 Hb_000156_150 0.0821607546 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
3 Hb_006012_030 0.1275746644 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
4 Hb_104362_010 0.1472202904 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
5 Hb_000099_110 0.1550485668 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
6 Hb_011609_200 0.160009466 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
7 Hb_000270_590 0.1619087602 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
8 Hb_012545_020 0.1655391447 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
9 Hb_000277_040 0.1697574891 - - -
10 Hb_000381_140 0.1717981142 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
11 Hb_014508_020 0.1746530277 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
12 Hb_002028_250 0.1749544334 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
13 Hb_000905_130 0.1761127724 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
14 Hb_010812_080 0.1765817618 - - PREDICTED: methylesterase 17 [Jatropha curcas]
15 Hb_008066_020 0.1772418968 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000087_110 0.1772628321 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005081_050 0.1772710389 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
18 Hb_093541_010 0.177307605 - - conserved hypothetical protein [Ricinus communis]
19 Hb_073680_010 0.1773172016 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_157950_010 0.1773206197 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001428_010 Hb_001428_010 Hb_000156_150 Hb_000156_150 Hb_001428_010--Hb_000156_150 Hb_006012_030 Hb_006012_030 Hb_001428_010--Hb_006012_030 Hb_104362_010 Hb_104362_010 Hb_001428_010--Hb_104362_010 Hb_000099_110 Hb_000099_110 Hb_001428_010--Hb_000099_110 Hb_011609_200 Hb_011609_200 Hb_001428_010--Hb_011609_200 Hb_000270_590 Hb_000270_590 Hb_001428_010--Hb_000270_590 Hb_000156_150--Hb_011609_200 Hb_000156_150--Hb_104362_010 Hb_000156_150--Hb_006012_030 Hb_002235_330 Hb_002235_330 Hb_000156_150--Hb_002235_330 Hb_000156_150--Hb_000270_590 Hb_012799_010 Hb_012799_010 Hb_006012_030--Hb_012799_010 Hb_006012_030--Hb_000099_110 Hb_012545_020 Hb_012545_020 Hb_006012_030--Hb_012545_020 Hb_001396_270 Hb_001396_270 Hb_006012_030--Hb_001396_270 Hb_000277_040 Hb_000277_040 Hb_006012_030--Hb_000277_040 Hb_104362_010--Hb_011609_200 Hb_003494_100 Hb_003494_100 Hb_104362_010--Hb_003494_100 Hb_034858_010 Hb_034858_010 Hb_104362_010--Hb_034858_010 Hb_004317_020 Hb_004317_020 Hb_104362_010--Hb_004317_020 Hb_000099_110--Hb_012545_020 Hb_000099_110--Hb_000277_040 Hb_010812_080 Hb_010812_080 Hb_000099_110--Hb_010812_080 Hb_000087_110 Hb_000087_110 Hb_000099_110--Hb_000087_110 Hb_093541_010 Hb_093541_010 Hb_000099_110--Hb_093541_010 Hb_101724_010 Hb_101724_010 Hb_000099_110--Hb_101724_010 Hb_160479_010 Hb_160479_010 Hb_011609_200--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_011609_200--Hb_033691_010 Hb_010068_010 Hb_010068_010 Hb_011609_200--Hb_010068_010 Hb_000926_240 Hb_000926_240 Hb_011609_200--Hb_000926_240 Hb_000905_130 Hb_000905_130 Hb_000270_590--Hb_000905_130 Hb_003050_210 Hb_003050_210 Hb_000270_590--Hb_003050_210 Hb_002701_200 Hb_002701_200 Hb_000270_590--Hb_002701_200 Hb_000296_030 Hb_000296_030 Hb_000270_590--Hb_000296_030 Hb_000381_140 Hb_000381_140 Hb_000270_590--Hb_000381_140 Hb_017524_020 Hb_017524_020 Hb_000270_590--Hb_017524_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.118913 1.3915 12.489 0 0.678045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11138 0

CAGE analysis